Browse Element(s) Details


OsAffx.32072.3.S1_at

Description tigr:9630.m04889
TID=OsAffx.32072.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4991011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49870Os.12058.1.S1_at11/112+30466113..30467246expressed protein
LOC_Os02g49880Os.50246.1.S1_at11/112+30467260..30469904CCT motif family protein, expressed
LOC_Os02g49880Os.50246.2.S1_x_at11/112+30467260..30469904CCT motif family protein, expressed
LOC_Os02g49880Os.50246.1.S2_at11/112+30467260..30469904CCT motif family protein, expressed
LOC_Os02g49890NANA2+30475960..30478891retrotransposon protein, putative, unclassified
LOC_Os02g49900NANA2+30479221..30485346retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49910OsAffx.32072.3.S1_at11/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.2.S1_x_at3/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.1.S1_x_at3/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.2.S1_at1/112+30489558..30491473hypothetical protein
LOC_Os02g49920OsAffx.12570.1.S1_at11/112+30494471..30495928very-long-chain fatty acid condensing enzyme, putative
LOC_Os02g49930OsAffx.30013.3.S1_x_at11/112+30501227..30502383hypothetical protein
LOC_Os02g49930OsAffx.30013.3.S1_at11/112+30501227..30502383hypothetical protein
LOC_Os02g49930OsAffx.30013.1.S1_x_at7/112+30501227..30502383hypothetical protein
LOC_Os02g49930OsAffx.30013.5.S1_x_at1/112+30501227..30502383hypothetical protein
LOC_Os02g49940NANA2+30507691..30508428transposon protein, putative, unclassified
LOC_Os02g49950Os.15803.1.S1_at11/112+30512193..30516546U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32072.3.S1_at--824--351Chr02:30490317..30490341 (25 bp)
ATAAGCACCCAAACACGAAAAATCG
LOC_Os02g49910
OsAffx.32072.3.S1_at--786--491Chr02:30490338..30490358 (21 bp)
ATCGATTTTTGCGTGAGGGTAACTG
LOC_Os02g49910
OsAffx.32072.3.S1_at--513--1971Chr02:30491188..30491212 (25 bp)
ACTGATGATTCTGCTCAACTGCCAG
LOC_Os02g49910
OsAffx.32072.3.S1_at--120--3271Chr02:30491203..30491227 (25 bp)
CAACTGCCAGTCATGTTTGCTGGGA
LOC_Os02g49910
OsAffx.32072.3.S1_at--1110--10271Chr02:30491218..30491309 (25 bp)
TTTGCTGGGATTATTGTGAAGGACA
LOC_Os02g49910
OsAffx.32072.3.S1_at--786--3591Chr02:30491308..30491332 (25 bp)
CATTGTAAAGGTAGCCATGTTGGTT
LOC_Os02g49910
OsAffx.32072.3.S1_at--648--6611Chr02:30491326..30491350 (25 bp)
GTTGGTTGTGGCACAACCTCAAAGC
LOC_Os02g49910
OsAffx.32072.3.S1_at--511--8991Chr02:30491367..30491391 (25 bp)
TGAAGCTGTCGATAAACGTACTACA
LOC_Os02g49910
OsAffx.32072.3.S1_at--618--2371Chr02:30491380..30491404 (25 bp)
AAACGTACTACAGTCGAACACCGAG
LOC_Os02g49910
OsAffx.32072.3.S1_at--974--8411Chr02:30491406..30491430 (25 bp)
GGCCGGTGTACTACATATTCCATTT
LOC_Os02g49910
OsAffx.32072.3.S1_at--975--3571Chr02:30491419..30491443 (25 bp)
CATATTCCATTTTTTAGTGCACAAC
LOC_Os02g49910
Target Sequence 
ATAAGCACCCAAACACGAAAAATCGATTTTTGCGTGAGGGTAACTGATGATTCTGCTCAACTGCCAGTCATGTTTGCTGG
GATTATTGTGAAGGACATTGTAAAGGTAGCCATGTTGGTTGTGGCACAACCTCAAAGCTGTATAAATATTCTGATGAAGC
TGTCGATAAACGTACTACAGTCGAACACCGAGAGGCCGGTGTACTACATATTCCATTTTTTAGTGCACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32072.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis