Browse Element(s) Details


OsAffx.32101.2.S1_at

Description tigr:9640.m03879
TID=OsAffx.32101.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3973011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39700NANA12+24481038..24491950retrotransposon protein, putative, unclassified
LOC_Os12g39710Os.47957.1.S1_at11/1112+24493169..24496268expressed protein
LOC_Os12g39720OsAffx.32100.2.S1_s_at11/1112+24497951..24500166expressed protein
LOC_Os12g39730OsAffx.32101.2.S1_at11/1112+24501302..24505155hypothetical protein
LOC_Os12g39730OsAffx.32101.3.S1_x_at6/1112+24501302..24505155hypothetical protein
LOC_Os12g39740OsAffx.25936.7.S1_s_at8/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.1.S1_s_at8/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.1.S1_at7/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.2.S1_x_at4/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.5.S1_x_at1/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39750NANA12+24514183..24514455hypothetical protein
LOC_Os12g39760Os.10827.1.S1_x_at11/1112+24515064..24518351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39760Os.46055.2.S1_x_at5/1112+24515064..24518351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39770OsAffx.22944.2.S1_s_at11/1112+24524789..24525499hypothetical protein
LOC_Os12g39770OsAffx.22944.4.S1_at11/1112+24524789..24525499hypothetical protein
LOC_Os12g39780OsAffx.32100.2.S1_s_at11/1112+24526079..24527905expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32101.2.S1_at--408--4412Chr12:24501734..24501758 (25 bp)
GCCACTGCCAACCACTAAGATTGAC
LOC_Os12g39730
OsAffx.32101.2.S1_at--88--9612Chr12:24501707..24501731 (25 bp)
TCATATTGATATGCTCCGCACTGCT
LOC_Os12g39730
OsAffx.32101.2.S1_at--1158--1051Chr12:24501669..24501693 (25 bp)
AGTCATCGTGCGTCGCTTTGGCAGC
LOC_Os12g39730
OsAffx.32101.2.S1_at--1103--4872Chr12:24501655..24501679 (25 bp)
GCTTTGGCAGCACTAACGAGTCAAT
LOC_Os12g39730
OsAffx.32101.2.S1_at--552--6111Chr12:24501592..24501616 (25 bp)
GAGTGCTCTCGACAAGCCCAGAAAA
LOC_Os12g39730
OsAffx.32101.2.S1_at--709--5351Chr12:24501523..24501547 (25 bp)
GAAGATGATTATTCCCGTGCTCAAT
LOC_Os12g39730
OsAffx.32101.2.S1_at--64--8931Chr12:24501458..24501482 (25 bp)
TGAGCGACATCGACAAGCTAAGGAT
LOC_Os12g39730
OsAffx.32101.2.S1_at--31--6171Chr12:24501432..24501456 (25 bp)
GAGGATATGAGATTGCGGCACAGTT
LOC_Os12g39730
OsAffx.32101.2.S1_at--384--6772Chr12:24501410..24501434 (25 bp)
GTTAGAGCAGGCGAGCGTACACCAA
LOC_Os12g39730
OsAffx.32101.2.S1_at--63--1392Chr12:24501350..24501374 (25 bp)
AGACGAGTTTGGTCTGTCCCAATAT
LOC_Os12g39730
OsAffx.32101.2.S1_at--372--7811Chr12:24501340..24501364 (25 bp)
GGTCTGTCCCAATATGTCTACAATA
LOC_Os12g39730
Target Sequence 
GCCACTGCCAACCACTAAGATTGACCATCATATTGATATGCTCCGCACTGCTCAAGACAAGGTGGAGTCATCGTGCGTCG
CTTTGGCAGCACTAACGAGTCAATATAACGTAGAACGGGCTGTAGAAGAAGGCAATAAGAGGGAGTGCTCTCGACAAGCC
CAGAAAATCAAAGCAGAGATAGCAATGTTGCAAGCAAAACTTCAACAGGTGGAAGATGATTATTCCCGTGCTCAATGCCA
CCAAGATGTTGTAATAGAGAACTTGAACTCCCATCTTGAGCGACATCGACAAGCTAAGGATCGAGGATATGAGATTGCGG
CACAGTTAGAGCAGGCGAGCGTACACCAAAAGTCTCTCCAAAATATTGAAGACTTTACTAAGCCAGACGAGTTTGGTCTG
TCCCAATATGTCTACAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32101.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis