Browse Element(s) Details


OsAffx.32104.1.S1_at

Description tigr:9640.m03892
TID=OsAffx.32104.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3985011/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39820NANA12+24575401..24575826retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39830Os.51953.1.S1_at11/1112+24585973..24588513Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g39840Os.15671.1.A1_at11/1112+24594281..24597403expressed protein
LOC_Os12g39850OsAffx.32104.1.S1_at11/1112+24598941..24600230Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g39860Os.5685.1.S1_at9/1112+24603370..24606245Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os12g39860OsAffx.26820.1.S1_at1/1112+24603370..24606245Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os12g39870OsAffx.20039.1.S1_at11/1112+24608161..24611398expressed protein
LOC_Os12g39870OsAffx.32105.1.S1_at11/1112+24608161..24611398expressed protein
LOC_Os12g39880Os.49916.1.S1_at11/1112+24612885..24615723expressed protein
LOC_Os12g39890OsAffx.32106.2.S1_at11/1112+24616310..24619047expressed protein
LOC_Os12g39890OsAffx.32106.2.S1_x_at11/1112+24616310..24619047expressed protein
LOC_Os12g39890OsAffx.32106.1.S1_at9/1112+24616310..24619047expressed protein
LOC_Os12g39900OsAffx.1319.1.S1_at1/1112+24619342..24622359transposon protein, putative, Mariner sub-class
LOC_Os12g39910OsAffx.20040.1.S1_x_at11/1112+24623929..24624704hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32104.1.S1_at--795--91Chr12:24599842..24599866 (25 bp)
ATTCCCTTGATTCATTCGGTAATGG
LOC_Os12g39850
OsAffx.32104.1.S1_at--1065--1611Chr12:24599815..24599839 (25 bp)
AGCTGGGCCACGAGGATCTTGATTC
LOC_Os12g39850
OsAffx.32104.1.S1_at--1116--6311Chr12:24599562..24599586 (25 bp)
GATGCAAGTGTTGCCATCCCAAATG
LOC_Os12g39850
OsAffx.32104.1.S1_at--137--8651Chr12:24599539..24599563 (25 bp)
TGGGAGCTGTTCCATTTCTGACAAT
LOC_Os12g39850
OsAffx.32104.1.S1_at--1018--2991Chr12:24599517..24599541 (25 bp)
AATGATTCCAGTTCATCCCAGGAGG
LOC_Os12g39850
OsAffx.32104.1.S1_at--792--3431Chr12:24599489..24599513 (25 bp)
CAGATGCTGGTGCTACTTCGAAAGG
LOC_Os12g39850
OsAffx.32104.1.S1_at--976--10611Chr12:24599473..24599497 (25 bp)
TTCGAAAGGCAAATCCCGGGCTGGC
LOC_Os12g39850
OsAffx.32104.1.S1_at--548--2751Chr12:24599288..24599312 (25 bp)
AAGACACTTCAGAACCTTGTGCCCA
LOC_Os12g39850
OsAffx.32104.1.S1_at--301--3531Chr12:24599141..24599165 (25 bp)
CATGCTTGAGGAGGCAGTCCACTAT
LOC_Os12g39850
OsAffx.32104.1.S1_at--199--1131Chr12:24599126..24599150 (25 bp)
AGTCCACTATGTGAAGTTCCTGCAG
LOC_Os12g39850
OsAffx.32104.1.S1_at--300--7991Chr12:24598981..24599005 (25 bp)
GGATGTATGCGCCAATTGCGTACAA
LOC_Os12g39850
Target Sequence 
ATTCCCTTGATTCATTCGGTAATGGCGAGCTGGGCCACGAGGATCTTGATTCGGTTAGTGGGACTAACAAGAGAAAACAG
TCGGCAGAAGGAGAATTTGATGGCCAAACAAGAGGTTCAAAATGCGCGAGAAAGGCTGAACCGAAGCGAGCGAAGAAGGC
CAAGCAAACTGTGGAGAAGGATGCAAGTGTTGCCATCCCAAATGGGAGCTGTTCCATTTCTGACAATGATTCCAGTTCAT
CCCAGGAGGTTGCAGATGCTGGTGCTACTTCGAAAGGCAAATCCCGGGCTGGCCGCGGAGCAGCCACTGATCCCCAGAGC
CTCTATGCAAGGAAAAGGAGAGAGAGGATCAATGAGAGGCTCAAGACACTTCAGAACCTTGTGCCCAATGGCACCAAAGT
TGATATCAGCACCATGCTTGAGGAGGCAGTCCACTATGTGAAGTTCCTGCAGCTTCAGATCAAGCTCCTCAGCTCCGATG
AAATGTGGATGTATGCGCCAATTGCGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis