Browse Element(s) Details


OsAffx.32106.1.S1_at

Description tigr:9629.m03572
TID=OsAffx.32106.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3770011/11hypothetical protein
LOC_Os12g398909/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37610OsAffx.8980.1.S1_at11/111+21375625..21380557transposon protein, putative, unclassified, expressed
LOC_Os01g37610Os.27639.1.S1_x_at10/111+21375625..21380557transposon protein, putative, unclassified, expressed
LOC_Os01g37630Os.6157.1.S1_at11/111+21383602..21384871hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g37650Os.5258.1.A1_at11/111+21389176..21390528hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g37660OsAffx.11364.1.S1_at5/111+21392308..21392757hypothetical protein
LOC_Os01g37670Os.31606.1.S1_at11/111+21395354..21397056F-box domain containing protein, expressed
LOC_Os01g37690Os.19755.2.S1_a_at11/111+21398344..21403577Vacuolar cation/proton exchanger 1a, putative, expressed
LOC_Os01g37700OsAffx.32106.1.S1_at11/111+21404854..21406169hypothetical protein
LOC_Os01g37700OsAffx.32106.2.S1_x_at5/111+21404854..21406169hypothetical protein
LOC_Os01g37710NANA1+21409660..21413408hypothetical protein
LOC_Os01g37720Os.40855.2.S1_x_at8/111+21421725..21422612hypothetical protein
LOC_Os01g37720Os.40855.4.S1_x_at3/111+21421725..21422612hypothetical protein
LOC_Os01g37720Os.40855.4.S1_at1/111+21421725..21422612hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32106.1.S1_at--1144--212Chr12:24617108..24617132 (25 bp)
ATTTGTGGCGGCAGCAACATAGTGC
LOC_Os12g39890
OsAffx.32106.1.S1_at--991--8352Chr12:24617114..24617138 (25 bp)
GGCGGCAGCAACATAGTGCACTCAA
LOC_Os12g39890
OsAffx.32106.1.S1_at--1085--5132Chr12:24617121..24617145 (25 bp)
GCAACATAGTGCACTCAAATGATGA
LOC_Os12g39890
OsAffx.32106.1.S1_at--234--6332Chr12:24617141..24617165 (25 bp)
GATGAATGCAAACAGCCTGCCCAGA
LOC_Os12g39890
OsAffx.32106.1.S1_at--650--3012Chr12:24617145..24617169 (25 bp)
AATGCAAACAGCCTGCCCAGATGTG
LOC_Os12g39890
OsAffx.32106.1.S1_at--68--2492Chr12:24617151..24617175 (25 bp)
AACAGCCTGCCCAGATGTGGTGCGG
LOC_Os12g39890
OsAffx.32106.1.S1_at--954--9131Chr01:21405238..21405262 (25 bp)
TGCGGGCAGCGGGTTCGAGGCAAGT
LOC_Os01g37700
OsAffx.32106.1.S1_at--688--6192Chr12:24617187..24617211 (25 bp)
GAGGCAAGTGGTTTCATCGTGAATC
LOC_Os12g39890
OsAffx.32106.1.S1_at--124--7512Chr12:24617194..24617218 (25 bp)
GTGGTTTCATCGTGAATCTGGCCGA
LOC_Os12g39890
OsAffx.32106.1.S1_at--889--5252Chr12:24617207..24617231 (25 bp)
GAATCTGGCCGATGTTTAGAAGAAG
LOC_Os12g39890
OsAffx.32106.1.S1_at--28--10231Chr01:21405288..21405312 (25 bp)
TTTAGAAGAAGGCAAGAACGTGATC
LOC_Os01g37700
Target Sequence 
ATTTGTGGCGGCAGCAACATAGTGCACTCAAATGATGAATGCAAACAGCCTGCCCAGATGTGGTGCGGGCAGCGGGTTCG
AGGCAAGTGGTTTCATCGTGAATCTGGCCGATGTTTAGAAGAAGGCAAGAACGTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis