Browse Element(s) Details


OsAffx.32107.1.S1_at

Description tigr:9640.m03900
TID=OsAffx.32107.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g399207/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39870OsAffx.20039.1.S1_at11/1112+24608161..24611398expressed protein
LOC_Os12g39870OsAffx.32105.1.S1_at11/1112+24608161..24611398expressed protein
LOC_Os12g39880Os.49916.1.S1_at11/1112+24612885..24615723expressed protein
LOC_Os12g39890OsAffx.32106.2.S1_at11/1112+24616310..24619047expressed protein
LOC_Os12g39890OsAffx.32106.2.S1_x_at11/1112+24616310..24619047expressed protein
LOC_Os12g39890OsAffx.32106.1.S1_at9/1112+24616310..24619047expressed protein
LOC_Os12g39900OsAffx.1319.1.S1_at1/1112+24619342..24622359transposon protein, putative, Mariner sub-class
LOC_Os12g39910OsAffx.20040.1.S1_x_at11/1112+24623929..24624704hypothetical protein
LOC_Os12g39920OsAffx.32107.1.S1_at7/1112+24636234..24638070expressed protein
LOC_Os12g39920Os.11758.1.S1_at1/1112+24636234..24638070expressed protein
LOC_Os12g39930OsAffx.32108.1.S1_at11/1112+24648104..24648630hypothetical protein
LOC_Os12g39930OsAffx.32108.1.S1_x_at11/1112+24648104..24648630hypothetical protein
LOC_Os12g39930OsAffx.32339.1.S1_x_at2/1112+24648104..24648630hypothetical protein
LOC_Os12g39940NANA12+24650767..24652855retrotransposon protein, putative, unclassified
LOC_Os12g39950OsAffx.29757.4.S1_x_at11/1112+24654676..24659054hypothetical protein
LOC_Os12g39950OsAffx.29757.1.S1_x_at3/1112+24654676..24659054hypothetical protein
LOC_Os12g39950OsAffx.29757.3.S1_x_at1/1112+24654676..24659054hypothetical protein
LOC_Os12g39960OsAffx.7839.1.S1_at11/1112+24661943..24662535transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32107.1.S1_at--599--5271Chr12:24636588..24636612 (25 bp)
GAATGCAGCACGACAAACCTTTTTG
LOC_Os12g39920
OsAffx.32107.1.S1_at--247--10391Chr12:24636568..24636592 (25 bp)
TTTTGACAGTGGCTCTTCTCCCTGA
LOC_Os12g39920
OsAffx.32107.1.S1_at--797--3591Chr12:24636536..24636560 (25 bp)
CATTCCCTAGAGATCACACCTGAAG
LOC_Os12g39920
OsAffx.32107.1.S1_at--267--3351Chr12:24636520..24636544 (25 bp)
CACCTGAAGGGTGCCTATTTCTGTT
LOC_Os12g39920
OsAffx.32107.1.S1_at--1022--4431Chr12:24636508..24636532 (25 bp)
GCCTATTTCTGTTAACTTGGACCAA
LOC_Os12g39920
OsAffx.32107.1.S1_at--565--9071Chr12:24636482..24636506 (25 bp)
TGCTTCACGGAAGCCTTCTCGAAAG
LOC_Os12g39920
OsAffx.32107.1.S1_at--307--7671Chr12:24636442..24636466 (25 bp)
GGGATTTCACATTGGCAGATTTTAA
LOC_Os12g39920
OsAffx.32107.1.S1_at--159--2331Chr12:24635582..24635606 (25 bp)
AAAGTTTCCGGATGACAGTGGGATT
NONE
OsAffx.32107.1.S1_at--530--711Chr12:24635551..24635575 (25 bp)
ATGATACCTTATCACCTAGGAGATT
NONE
OsAffx.32107.1.S1_at--1130--4291Chr12:24635537..24635561 (25 bp)
CCTAGGAGATTTTATTGCACGGATT
NONE
OsAffx.32107.1.S1_at--39--3051Chr12:24635501..24635525 (25 bp)
AATCCTGGATGGAATTGACATCACC
NONE
Target Sequence 
GAATGCAGCACGACAAACCTTTTTGACAGTGGCTCTTCTCCCTGATCAAAACCATTCCCTAGAGATCACACCTGAAGGGT
GCCTATTTCTGTTAACTTGGACCAAGTGCTTCACGGAAGCCTTCTCGAAAGGCAAGAGTTGGAATGGGGATTTCACATTG
GCAGATTTTAAGACAAACAATGAGGAAGAAAAGTTTCCGGATGACAGTGGGATTGAATTAATGATACCTTATCACCTAGG
AGATTTTATTGCACGGATTGTTGCAAAAGTAATCCTGGATGGAATTGACATCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis