Browse Element(s) Details


OsAffx.32166.4.S1_at

Description gb:NM_195557.1
DB_XREF= gi:37532473
TID=OsAffx.32166.4
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0047B19.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1534011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15279OsAffx.27854.1.S1_at3/1110+7773567..7776622hypothetical protein
LOC_Os10g15279Os.9762.1.S1_at1/1110+7773567..7776622hypothetical protein
LOC_Os10g15290OsAffx.30423.1.S1_at11/1110+7777970..7778968hypothetical protein
LOC_Os10g15300Os.13717.1.S1_at11/1110+7782550..7783259expressed protein
LOC_Os10g15310Os.11953.1.S1_at8/1110+7788439..7790310hypothetical protein
LOC_Os10g15310OsAffx.24767.1.S1_x_at1/1110+7788439..7790310hypothetical protein
LOC_Os10g15320OsAffx.18258.1.S1_at11/1110+7791909..7792637hypothetical protein
LOC_Os10g15330OsAffx.30424.1.S1_s_at11/1110+7795015..7796476hypothetical protein
LOC_Os10g15340OsAffx.32166.4.S1_at11/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340Os.36736.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340OsAffx.18435.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15360OsAffx.24744.4.A1_at11/1110+7819182..7819625retrotransposon protein, putative, unclassified
LOC_Os10g15370OsAffx.8327.1.S1_at10/1110+7823635..7823927expressed protein
LOC_Os10g15390Os.17285.2.S1_x_at10/1110+7824172..7834913expressed protein
LOC_Os10g15390Os.46706.1.S1_x_at10/1110+7824172..7834913expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32166.4.S1_at--576--4511Chr10:7801482..7801506 (25 bp)
GCCGCGGTAAACTTGATGCCGTACG
LOC_Os10g15340
OsAffx.32166.4.S1_at--773--6351Chr10:7801468..7801492 (25 bp)
GATGCCGTACGCCACATTCAGGAAG
LOC_Os10g15340
OsAffx.32166.4.S1_at--958--5431Chr10:7801435..7801459 (25 bp)
GAACGCGGAATACCTCATGAAAACT
LOC_Os10g15340
OsAffx.32166.4.S1_at--679--1011Chr10:7801294..7801318 (25 bp)
AGGTTCGTATGGTCTATTACACGGA
LOC_Os10g15340
OsAffx.32166.4.S1_at--50--8131Chr10:7801267..7801291 (25 bp)
GGACTGGATCCACGCGAATTATTGT
LOC_Os10g15340
OsAffx.32166.4.S1_at--1087--5211Chr10:7801252..7801276 (25 bp)
GAATTATTGTATCCCTTCGACTATG
LOC_Os10g15340
OsAffx.32166.4.S1_at--929--5692Chr10:7801234..7801258 (25 bp)
GACTATGCACCAGAGTTTAATCCAG
LOC_Os10g15340
OsAffx.32166.4.S1_at--646--5292Chr09:7133359..7133378 (20 bp)
GAAGTCGTGCTAGCCGATAGATCGG
NONE
OsAffx.32166.4.S1_at--851--6371Chr10:7801172..7801196 (25 bp)
GATCGGTTAACGTTGCTAACGCCGA
LOC_Os10g15340
OsAffx.32166.4.S1_at--310--4831Chr10:7801158..7801182 (25 bp)
GCTAACGCCGATTTAACTATTTGGG
LOC_Os10g15340
OsAffx.32166.4.S1_at--609--3171Chr10:7801034..7801058 (25 bp)
AATTGTTACTTCGAGGACACCATGG
LOC_Os10g15340
Target Sequence 
GCCGCGGTAAACTTGATGCCGTACGCCACATTCAGGAAGCTAGGAAAGAACGCGGAATACCTCATGAAAACTAACATGGT
TCTTAAGGACTTTGGTGGAAATCCAACGGAAGCCAATGGCGTTTTGAAAATCAAGATAACCGTTGGCAGCAAGACGGTCC
CGACTACCTTCTTTGTCATCGATGGGAAAGGTTCGTATGGTCTATTACACGGAAGGGACTGGATCCACGCGAATTATTGT
ATCCCTTCGACTATGCACCAGAGTTTAATCCAGTGGCAAGGTGACCAGATAGAAGTCGTGCTAGCCGATAGATCGGTTAA
CGTTGCTAACGCCGATTTAACTATTTGGGAGATGGACGTGATTGATTGCTTATCTAGAAACGTCTGGGAAGGAGGATATC
TGAAGGTGTCCGATCATGACATACAGCTGATTGGAGGTGAAGAACCTCAATTGTTACTTCGAGGACACCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32166.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis