Browse Element(s) Details


OsAffx.3220.1.S1_at

Description tigr:9631.m01246
TID=OsAffx.3220.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1318011/11Peroxidase 53 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13110OsAffx.31816.1.S1_at3/113+7058666..7061399transposon protein, putative, Mariner sub-class
LOC_Os03g13120Os.53257.1.S1_at5/113+7061831..7063710hypothetical protein
LOC_Os03g13130Os.53391.1.S1_at11/113+7067416..7071607ternary complex factor MIP1, putative, expressed
LOC_Os03g13140Os.12191.1.S1_at11/113+7071852..7073121Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g13140Os.12191.1.S1_s_at11/113+7071852..7073121Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g13140Os.12191.1.S1_x_at11/113+7071852..7073121Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g13150Os.12191.1.S1_s_at2/113+7075783..7076623Non-symbiotic hemoglobin 3, putative
LOC_Os03g13160Os.12191.1.S1_s_at2/113+7079290..7080322Non-symbiotic hemoglobin 4, putative
LOC_Os03g13170Os.12772.1.S1_at11/113+7081245..7083866ubiquitin fusion protein, putative, expressed
LOC_Os03g13170Os.51218.1.S1_at1/113+7081245..7083866ubiquitin fusion protein, putative, expressed
LOC_Os03g13180OsAffx.3220.1.S1_at11/113+7086366..7087553Peroxidase 53 precursor, putative, expressed
LOC_Os03g13190OsAffx.3221.1.S1_at11/113+7090057..7094241transposon protein, putative, unclassified, expressed
LOC_Os03g13200Os.9893.1.S1_at11/113+7103982..7106242Peroxidase 53 precursor, putative, expressed
LOC_Os03g13210Os.159.1.S1_s_at11/113+7107383..7109455Peroxidase N precursor, putative, expressed
LOC_Os03g13220Os.9335.1.S1_at10/113+7111680..7115147expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3220.1.S1_at--295--3951Chr03:7087040..7087064 (25 bp)
CGGACCGACGGACGATCTGGACCTC
LOC_Os03g13180
OsAffx.3220.1.S1_at--1136--6391Chr03:7087053..7087077 (25 bp)
GATCTGGACCTCCTGAGACGGAAAT
LOC_Os03g13180
OsAffx.3220.1.S1_at--459--5831Chr03:7087059..7087083 (25 bp)
GACCTCCTGAGACGGAAATTCTCCG
LOC_Os03g13180
OsAffx.3220.1.S1_at--194--2251Chr03:7087074..7087098 (25 bp)
AAATTCTCCGAATTCAACCTCGACG
LOC_Os03g13180
OsAffx.3220.1.S1_at--319--3311Chr03:7087128..7087152 (25 bp)
CACACCATCGGGAGGGCGCAGTGCA
LOC_Os03g13180
OsAffx.3220.1.S1_at--415--5011Chr03:7087145..7087169 (25 bp)
GCAGTGCAGGTTCTTCCACGACCGG
LOC_Os03g13180
OsAffx.3220.1.S1_at--601--1851Chr03:7087162..7087186 (25 bp)
ACGACCGGCTCTACAACATCAGCGG
LOC_Os03g13180
OsAffx.3220.1.S1_at--771--1691Chr03:7087201..7087225 (25 bp)
ACCAGACGCTGGACATGGCCTACCT
LOC_Os03g13180
OsAffx.3220.1.S1_at--770--9311Chr03:7087309..7087333 (25 bp)
TCGACAATAGCTACTACGGCAACCT
LOC_Os03g13180
OsAffx.3220.1.S1_at--396--3551Chr03:7087412..7087436 (25 bp)
CATCGTCGTGTGGTTCGCCGGTAGC
LOC_Os03g13180
OsAffx.3220.1.S1_at--1075--9311Chr03:7087426..7087450 (25 bp)
TCGCCGGTAGCCAGGACGACTTCTT
LOC_Os03g13180
Target Sequence 
CGGACCGACGGACGATCTGGACCTCCTGAGACGGAAATTCTCCGAATTCAACCTCGACGACACCGACTTCGTCGCTCTCC
AGGGCGCGCACACCATCGGGAGGGCGCAGTGCAGGTTCTTCCACGACCGGCTCTACAACATCAGCGGCACGGAGCAGCCG
GACCAGACGCTGGACATGGCCTACCTCAACGAGCTCCGGCAGAGCTGCCCGGCGAGCGACCCCGAAAGCGCGGCGCTGCG
CAACCTCGACCCGCCCACGCCGGACGCGTTCGACAATAGCTACTACGGCAACCTCCTGCGCAACCGCGGCCTGCTCCAGT
CCGACCAGGGGATGCTCTCCGCGCCGGGCGGCGCCGCCTCGACCACCGCGCCCATCGTCGTGTGGTTCGCCGGTAGCCAG
GACGACTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis