Browse Element(s) Details


OsAffx.32305.1.S1_x_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=rpl5
TID=OsAffx.32305.1
CNT=1
FEA=DNA_47
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal protein L5 (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=Ribosomal protein L5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0889011/11Mitochondrial 60S ribosomal protein L5, putative
LOC_Os12g236102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08860NANA9+4680329..4683252retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08870NANA9+4683578..4689688retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08880OsAffx.30475.3.S1_s_at5/119+4691153..4692007ATP synthase alpha chain, putative
LOC_Os09g08890OsAffx.32305.1.S1_x_at11/119+4703612..4706429Mitochondrial 60S ribosomal protein L5, putative
LOC_Os09g08890OsAffx.29772.1.S1_at10/119+4703612..4706429Mitochondrial 60S ribosomal protein L5, putative
LOC_Os09g08890OsAffx.32304.1.S1_at2/119+4703612..4706429Mitochondrial 60S ribosomal protein L5, putative
LOC_Os09g08900Os.27691.1.S1_x_at1/119+4714030..4719783retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08900Os.27691.2.S1_x_at1/119+4714030..4719783retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08910OsAffx.26050.4.S1_at11/119+4727302..4729884ATP synthase alpha chain, mitochondrial, putative, expressed
LOC_Os09g08910OsAffx.32306.1.S1_x_at7/119+4727302..4729884ATP synthase alpha chain, mitochondrial, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015992biological_processproton transport
GO:0042776biological_processATP synthesis coupled proton transport (sensu Eukaryota)
GO:0045333biological_processcellular respiration
GO:0005739cellular_componentmitochondrion
GO:0005762cellular_componentmitochondrial large ribosomal subunit
GO:0005840cellular_componentribosome
GO:0016020cellular_componentmembrane
GO:0045255cellular_componenthydrogen-translocating F-type ATPase complex
GO:0003735molecular_functionstructural constituent of ribosome
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32305.1.S1_x_at--810--6872Chr09:4706372..4706396 (25 bp)
GTATTACGTCAGGATCTGTTGCTCA
LOC_Os09g08890
OsAffx.32305.1.S1_x_at--926--6673Chr04:9835961..9835985 (25 bp)
GTTGCTCAAACTGAATCACGCCAAT
NONE
OsAffx.32305.1.S1_x_at--685--6552Chr09:4706299..4706323 (25 bp)
GATTAGTACCAAAAGCTGCCTCTGA
LOC_Os09g08890
OsAffx.32305.1.S1_x_at--244--6551Chr09:4706241..4706265 (25 bp)
GATTTTGTGCGGTCAGAGATTCATA
LOC_Os09g08890
OsAffx.32305.1.S1_x_at--468--2851Chr09:4706183..4706207 (25 bp)
AAGTCGTTTCGATCCAATCCATTCT
LOC_Os09g08890
OsAffx.32305.1.S1_x_at--130--6511Chr09:4706137..4706161 (25 bp)
GATATGTCAGTGACTTTGCACGACA
LOC_Os09g08890
OsAffx.32305.1.S1_x_at--159--1851Chr09:4706118..4706142 (25 bp)
ACGACAAAGCGTTCTCCGAGGGCAT
LOC_Os09g08890
OsAffx.32305.1.S1_x_at--847--7151Chr09:4706055..4706079 (25 bp)
GTCTATGTTAGATTCTCCGGTCGAA
LOC_Os09g08890
OsAffx.32305.1.S1_x_at--186--7611Chr09:4706026..4706050 (25 bp)
GGGAAAACTCCATCAAATTCTTTAT
LOC_Os09g08890
OsAffx.32305.1.S1_x_at--641--5213Chr12:13405347..13405371 (25 bp)
GAATTCTCCCCGGAACTGGAAGATC
LOC_Os12g23610
OsAffx.32305.1.S1_x_at--672--7374Chr12:13405287..13405311 (25 bp)
GTGACTATTGTCACTTCGGCCAATA
LOC_Os12g23610
Target Sequence 
GTATTACGTCAGGATCTGTTGCTCAAACTGAATCACGCCAATGTTATGGAAGTTCCTGGATTGTTTGAAATCAGATTAGT
ACCAAAAGCTGCCTCTGATTTTAAAATCCAATTTGGAAAATTGGCTATGGAGATTTTGTGCGGTCAGAGATTCATACAGA
CACAAAGGGGCCCTTATTTTAAAGCAGGAAAGTCGTTTCGATCCAATCCATTCTTGGGGTCCGAAAAAGACACTGGATAT
GTCAGTGACTTTGCACGACAAAGCGTTCTCCGAGGGCATGGAATGTACCATTTTTTGGTCAGAATCTTGACAGTAATGTC
TATGTTAGATTCTCCGGTCGAAATATGGGAAAACTCCATCAAATTCTTTATGGAAACGGAGTTTTGCGAATTCTCCCCGG
AACTGGAAGATCATTTCGAGATCTTCGAGCATATTCGAGGGTTCAATGTGACTATTGTCACTTCGGCCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32305.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis