Browse Element(s) Details


OsAffx.3272.1.S1_at

Description tigr:9631.m01871
TID=OsAffx.3272.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to C-x8-C-x5-C-x3-H type Zinc finger protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1895010/11Zinc finger C-x8-C-x5-C-x3-H type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18900NANA3+10570513..10571225expressed protein
LOC_Os03g18910Os.49999.1.S1_x_at11/113+10578122..10580561COBRA-like protein 7 precursor, putative, expressed
LOC_Os03g18930OsAffx.12930.1.S1_at11/113+10584007..10584580hypothetical protein
LOC_Os03g18940Os.49715.1.S1_at11/113+10585919..10591295exonuclease family protein, expressed
LOC_Os03g18950OsAffx.3272.1.S1_at10/113+10592566..10594614Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os03g18960OsAffx.3273.1.S1_at11/113+10596815..10599556calmodulin-binding protein, putative, expressed
LOC_Os03g18970Os.49654.1.S1_at11/113+10600735..10604430protein phosphatase 2C, putative, expressed
LOC_Os03g18980Os.54684.1.S1_at7/113+10609092..10614810Kinesin-4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3272.1.S1_at--719--1511Chr03:10593482..10593506 (25 bp)
AGCAGCGGAAGCAGGCATCCGCCAT
LOC_Os03g18950
OsAffx.3272.1.S1_at--1035--3491Chr03:10593504..10593528 (25 bp)
CATGGCTCCGCCGAAGCTAGAGGAG
LOC_Os03g18950
OsAffx.3272.1.S1_at--68--9311Chr03:10593510..10593534 (25 bp)
TCCGCCGAAGCTAGAGGAGGACGAA
LOC_Os03g18950
OsAffx.3272.1.S1_at--227--5371Chr03:10593555..10593579 (25 bp)
GAAGAGCATCTCCATTCGTTCGCCG
LOC_Os03g18950
OsAffx.3272.1.S1_at--148--10651Chr03:10593573..10593597 (25 bp)
TTCGCCGGGCTACCTCTCTCAGAAG
LOC_Os03g18950
OsAffx.3272.1.S1_at--789--8791Chr03:10593633..10593657 (25 bp)
TGTTCGCGCTTCTCAGGCGATGGAG
LOC_Os03g18950
OsAffx.3272.1.S1_at--981--891NONE
AGGCGATGGAGATTTCGCACCCCAA
NONE
OsAffx.3272.1.S1_at--26--211Chr03:10594249..10594273 (25 bp)
ATTTCGCACCCCAACTGTTTGATTT
LOC_Os03g18950
OsAffx.3272.1.S1_at--504--5091Chr03:10594254..10594278 (25 bp)
GCACCCCAACTGTTTGATTTTTGTG
LOC_Os03g18950
OsAffx.3272.1.S1_at--179--5251Chr03:10594284..10594308 (25 bp)
GAATCAATGTTCACCGAAGGAGGCA
LOC_Os03g18950
OsAffx.3272.1.S1_at--962--9011Chr03:10594402..10594426 (25 bp)
TGCAACAAGTGGGAGCGCGGCGCGT
LOC_Os03g18950
Target Sequence 
AGCAGCGGAAGCAGGCATCCGCCATGGCTCCGCCGAAGCTAGAGGAGGACGAAGCAGCACAGGGGGGCGCACCGAAGAGC
ATCTCCATTCGTTCGCCGGGCTACCTCTCTCAGAAGCCGCCGCAGGGGCAGGCCAGGCCACAGCGCCTCCGTGTTCGCGC
TTCTCAGGCGATGGAGATTTCGCACCCCAACTGTTTGATTTTTGTGATGGGGAATCAATGTTCACCGAAGGAGGCAGCGG
CAGCAGGGGATGAGGAGGATGAGGAGGACAAGGGCGGCGGCGAGGTGGAGGTGGAGGCGTACAGGCAGGGCGCGGCGAAG
ACGGAGCTGTGCAACAAGTGGGAGCGCGGCGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis