Browse Element(s) Details


OsAffx.3305.1.S1_at

Description tigr:9631.m02377
TID=OsAffx.3305.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2439011/11rhomboid protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24339Os.14522.1.S1_s_at11/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339OsAffx.13002.1.S1_at11/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.14522.1.S1_at2/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.8539.1.S1_at1/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.24327.1.A1_at1/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.32984.1.S1_at1/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.45957.4.S1_x_at1/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24360NANA3+13844696..13850851transposon protein, putative, unclassified
LOC_Os03g24370NANA3+13851483..13854719transposon protein, putative, unclassified
LOC_Os03g24380Os.8539.1.S1_at11/113+13857887..13861346glutathione peroxidase, putative, expressed
LOC_Os03g24390OsAffx.3305.1.S1_at11/113+13862507..13866586rhomboid protein, putative, expressed
LOC_Os03g24400OsAffx.3306.1.S1_at10/113+13872174..13873937hypothetical protein
LOC_Os03g24400OsAffx.8626.1.S1_at1/113+13872174..13873937hypothetical protein
LOC_Os03g24410OsAffx.25204.1.S1_at11/113+13883541..13886129hypothetical protein
LOC_Os03g24420OsAffx.3307.1.S1_at11/113+13889373..13892968hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3305.1.S1_at--134--10611Chr03:13864302..13864326 (25 bp)
TTCTGGGTTCTATGGAGTTCTTTCA
LOC_Os03g24390
OsAffx.3305.1.S1_at--978--10411Chr03:13864029..13864053 (25 bp)
TTATTTGGCATCTACCTGAGCTGGA
LOC_Os03g24390
OsAffx.3305.1.S1_at--374--3851Chr03:13864014..13864038 (25 bp)
CTGAGCTGGATTTACCTGCGTTACT
LOC_Os03g24390
OsAffx.3305.1.S1_at--981--7631Chr03:13863959..13863983 (25 bp)
GGGACCCAAGTGATGAATTCTCATT
LOC_Os03g24390
OsAffx.3305.1.S1_at--162--3751Chr03:13863934..13863958 (25 bp)
CTCAAGCTTCTTCCCTGAATTTTTG
LOC_Os03g24390
OsAffx.3305.1.S1_at--538--10391Chr03:13863345..13863364 (20 bp)
TTTTGAGACCAGTTTTGGACCCAAT
LOC_Os03g24390
OsAffx.3305.1.S1_at--687--5811Chr03:13863328..13863352 (25 bp)
GACCCAATAGCATCTGTGTTCCATA
LOC_Os03g24390
OsAffx.3305.1.S1_at--302--2191Chr03:13863304..13863328 (25 bp)
ACACTTGTTTGTGGACGATCCGAAA
LOC_Os03g24390
OsAffx.3305.1.S1_at--38--8012Chr04:16584004..16584099 (25 bp)
GGATGGGCTGTTACCTGGTTCATAT
NONE
OsAffx.3305.1.S1_at--473--9131Chr03:13862573..13862597 (25 bp)
TGCTGTGCTGTCAGGAGATTCTTCT
LOC_Os03g24390
OsAffx.3305.1.S1_at--786--1351Chr03:13862538..13862562 (25 bp)
AGAGAATCGTGGACAGCTTCAGCTG
LOC_Os03g24390
Target Sequence 
TTCTGGGTTCTATGGAGTTCTTTCAGGATTTCTGGTGGGTATCAAGCAAATTTTACCTGATCAAGAGATTACTCTTTTCC
TGCTGAATATTAAAGCAAAGTGGATTCCATCTCTTGTTGCATTTATTTCGGTTTCCCTAAGCTTCTTCATGAAGGATTCA
GTGTCATACATCCCAATCATATTATTTGGCATCTACCTGAGCTGGATTTACCTGCGTTACTTCCAAAAGAGGCTAGAAGC
AGGCTTAAAGGGGGACCCAAGTGATGAATTCTCATTCTCAAGCTTCTTCCCTGAATTTTTGAGACCAGTTTTGGACCCAA
TAGCATCTGTGTTCCATACACTTGTTTGTGGACGATCCGAAAGATCTGAAGCCAATGATCAAACACTGGATGGGCTGTTA
CCTGGTTCATATTCTATTGAGGCAAACCGTAGAAGAGAAAGGGGTCAAAGGGCACTTGAGCAAAGATTGGCTGAAAAGCT
GGCTGCGCTGGAGCAGCGCTGTGCTGTGCTGTCAGGAGATTCTTCTAAATTTGCAGAGAGAATCGTGGACAGCTTCAGCT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis