Browse Element(s) Details


OsAffx.3315.1.S1_s_at

Description tigr:9631.m02431
TID=OsAffx.3315.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2491011/11nodulation protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24870Os.31838.1.S1_at10/113+14144400..14149212Sugar transporter family protein, expressed
LOC_Os03g24880OsAffx.25214.1.S1_at11/113+14153330..14155024pentatricopeptide, putative
LOC_Os03g24890Os.6246.1.S1_at11/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24890OsAffx.25215.1.S1_at10/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24890OsAffx.10482.1.S1_x_at1/113+14155226..14159818RNA recognition motif family protein, expressed
LOC_Os03g24900Os.10674.1.S1_at11/113+14162432..14166957zinc finger family protein, putative, expressed
LOC_Os03g24910OsAffx.3315.1.S1_s_at11/113+14167517..14171210nodulation protein, putative, expressed
LOC_Os03g24920Os.36846.1.S1_at11/113+14174966..14178118ubiquitin, putative, expressed
LOC_Os03g24930Os.12007.1.S1_at11/113+14185785..14187966Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os03g24940Os.27135.1.A1_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940OsAffx.13012.1.S1_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940OsAffx.13012.1.S1_x_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940Os.48734.1.S1_s_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940Os.48734.1.S1_at4/113+14192013..14199487proline-rich family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3315.1.S1_s_at--1109--7031Chr03:14167809..14167833 (25 bp)
GTAACATGAATCCTCAGGCTACTGA
LOC_Os03g24910
OsAffx.3315.1.S1_s_at--935--9631Chr03:14167796..14167820 (25 bp)
TCAGGCTACTGAACTGACCACCAAT
LOC_Os03g24910
OsAffx.3315.1.S1_s_at--1008--3331Chr03:14167778..14167802 (25 bp)
CACCAATCCCCATTCAAATTACTGA
LOC_Os03g24910
OsAffx.3315.1.S1_s_at--896--10351Chr03:14167721..14167745 (25 bp)
TTTTTCCCCATACTCAAATTACTGA
LOC_Os03g24910
OsAffx.3315.1.S1_s_at--1130--10351Chr03:14167682..14167706 (25 bp)
TTTTTTCATGCAGGCACTGTCGCGA
LOC_Os03g24910
OsAffx.3315.1.S1_s_at--1152--1951Chr03:14167667..14167691 (25 bp)
ACTGTCGCGAGTTCAAGAGTTCCTT
LOC_Os03g24910
OsAffx.3315.1.S1_s_at--201--2791Chr03:14167653..14167677 (25 bp)
AAGAGTTCCTTGGAGTTCCAGCGAT
LOC_Os03g24910
OsAffx.3315.1.S1_s_at--320--6691Chr03:14167639..14167663 (25 bp)
GTTCCAGCGATGAGGTTGTCCAGCA
LOC_Os03g24910
OsAffx.3315.1.S1_s_at--690--771Chr03:14167611..14167635 (25 bp)
ATGTGAAGATCCACACAAGCCCTCT
LOC_Os03g24910
OsAffx.3315.1.S1_s_at--846--4291Chr03:14167591..14167615 (25 bp)
CCTCTTCCTGACCTTGTTGATAATT
LOC_Os03g24910
OsAffx.3315.1.S1_s_at--79--2151Chr03:14167537..14167561 (25 bp)
ACAGAGTACGCTCGTTTTGTTGATG
LOC_Os03g24910
Target Sequence 
GTAACATGAATCCTCAGGCTACTGAACTGACCACCAATCCCCATTCAAATTACTGAACTGACCATCAAATTACTGAAATA
GTAACATATTTTTCCCCATACTCAAATTACTGAAACAGTAACATTTTTTTTTTCATGCAGGCACTGTCGCGAGTTCAAGA
GTTCCTTGGAGTTCCAGCGATGAGGTTGTCCAGCAGGCATGTGAAGATCCACACAAGCCCTCTTCCTGACCTTGTTGATA
ATTGGGAGGAAGTGAGCGAGAAGCTAAATGGGACAGAGTACGCTCGTTTTGTTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3315.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis