Browse Element(s) Details


OsAffx.3376.1.S1_at

Description tigr:9631.m03033
TID=OsAffx.3376.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g309348/11expressed protein
LOC_Os07g073601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30880NANA3+17552622..17553505retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30890Os.26892.1.A1_at11/113+17554190..17558432D-mannose binding lectin family protein, expressed
LOC_Os03g30910OsAffx.13137.1.S1_at11/113+17560174..17562653NB-ARC domain containing protein, expressed
LOC_Os03g30920Os.52888.1.S1_at11/113+17566246..17568562F-box domain containing protein, expressed
LOC_Os03g30934Os.18984.1.S1_at10/113+17571154..17577125expressed protein
LOC_Os03g30934OsAffx.3376.1.S1_at8/113+17571154..17577125expressed protein
LOC_Os03g30950Os.18462.1.S1_at11/113+17578411..17579996Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os03g30970OsAffx.447.1.S1_at4/113+17586969..17588429retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30980OsAffx.31069.2.S1_x_at1/113+17598927..17602595hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3376.1.S1_at--516--7171Chr03:17577419..17577443 (25 bp)
GTGGGTGGATTTTCTGACCCAAGGA
NONE
OsAffx.3376.1.S1_at--1113--7711Chr03:17577416..17577440 (25 bp)
GGTGGATTTTCTGACCCAAGGAGTC
NONE
OsAffx.3376.1.S1_at--215--8551Chr03:17577414..17577438 (25 bp)
TGGATTTTCTGACCCAAGGAGTCGG
NONE
OsAffx.3376.1.S1_at--100--2391Chr03:17576687..17576946 (25 bp)
AAACTCTGAGAGTATTCAAGTGAAG
LOC_Os03g30934
OsAffx.3376.1.S1_at--766--53312Chr07:3680250..3680269 (20 bp)
GAAGTATTCATGCTATTTTTGGGCT
LOC_Os07g07360
OsAffx.3376.1.S1_at--429--3531Chr03:17576658..17576682 (25 bp)
CATGCTATTTTTGGGCTGAATCGAT
LOC_Os03g30934
OsAffx.3376.1.S1_at--916--3672Chr11:5705424..5705447 (24 bp)
CTATTTTTGGGCTGAATCGATGGAG
NONE
OsAffx.3376.1.S1_at--970--8332Chr11:5705432..5705456 (25 bp)
GGCTGAATCGATGGAGTTGCTACTC
NONE
OsAffx.3376.1.S1_at--897--5253Chr11:5705436..5705460 (25 bp)
GAATCGATGGAGTTGCTACTCACTG
NONE
OsAffx.3376.1.S1_at--183--6253Chr11:5705441..5705460 (20 bp)
GATGGAGTTGCTACTCACTGTGGTT
NONE
OsAffx.3376.1.S1_at--391--8552Chr04:6292501..6292521 (21 bp)
TGGAGTTGCTACTCACTGTGGTTGC
NONE
Target Sequence 
GTGGGTGGATTTTCTGACCCAAGGAGTCGGGGCCGGGGCCTGCAATTGGGCGGGGGAGAGGCGCGGCGGGACAGCGCCCG
CGGCGGCGCGGCGGCGGCGCAGCGTCGCAGAGGCGTGGCGGCGGCGCACCGGCACAGCACACAAGCTGAGAGCGTCTCTG
AGACGCACGTCGAGAGAAACTCTGAGAGTATTCAAGTGAAGTATTCATGCTATTTTTGGGCTGAATCGATGGAGTTGCTA
CTCACTGTGGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis