Browse Element(s) Details


OsAffx.3383.1.S1_at

Description tigr:9631.m03111
TID=OsAffx.3383.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Subtilase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3163011/11Subtilase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31594Os.6505.1.S1_at11/113+17981642..17996775jmjC domain containing protein, expressed
LOC_Os03g31594OsAffx.3382.1.S1_at11/113+17981642..17996775jmjC domain containing protein, expressed
LOC_Os03g31594OsAffx.9818.1.S1_x_at1/113+17981642..17996775jmjC domain containing protein, expressed
LOC_Os03g31620OsAffx.11386.1.S1_x_at4/113+18000919..18005212retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31620OsAffx.19821.1.S1_x_at2/113+18000919..18005212retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31620OsAffx.19821.1.S1_at2/113+18000919..18005212retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31630OsAffx.3383.1.S1_at11/113+18007912..18010278Subtilase family protein
LOC_Os03g31634Os.57189.1.S1_at1/113+18014639..18016131hypothetical protein
LOC_Os03g31640OsAffx.20565.1.S1_at1/113+18022030..18024946retrotransposon protein, putative, unclassified
LOC_Os03g31650OsAffx.22722.1.S1_x_at1/113+18025576..18030624retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31660OsAffx.13286.1.S1_at5/113+18034744..18036693Transposable element protein, putative, MuDR
LOC_Os03g31660OsAffx.13287.1.S1_at1/113+18034744..18036693Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005576cellular_componentextracellular region
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3383.1.S1_at--777--6371Chr03:18009720..18009744 (25 bp)
GATCCTGGACGAACACCACGAGAGG
LOC_Os03g31630
OsAffx.3383.1.S1_at--244--1871Chr03:18009737..18009761 (25 bp)
ACGAGAGGGCGACCGCGTTCCTCAC
LOC_Os03g31630
OsAffx.3383.1.S1_at--26--1811Chr03:18009797..18009821 (25 bp)
ACCCAGGCCTAGTGTACGACATCGC
LOC_Os03g31630
OsAffx.3383.1.S1_at--399--4011Chr03:18009882..18009906 (25 bp)
CGTGCGCAACGAGAGCTTGAGCTGC
LOC_Os03g31630
OsAffx.3383.1.S1_at--131--4771Chr03:18009902..18009926 (25 bp)
GCTGCGGGAAGCTGGACAAGAACAA
LOC_Os03g31630
OsAffx.3383.1.S1_at--68--2231Chr03:18009923..18009947 (25 bp)
ACAAGATACCGGAGGCGCAGCTCAA
LOC_Os03g31630
OsAffx.3383.1.S1_at--3--7811Chr03:18010046..18010070 (25 bp)
GGTCGACCTACACGATGAAGCTGGA
LOC_Os03g31630
OsAffx.3383.1.S1_at--403--8551Chr03:18010067..18010091 (25 bp)
TGGAGATACCCAGGTCGCTGACGAT
LOC_Os03g31630
OsAffx.3383.1.S1_at--932--8791Chr03:18010115..18010139 (25 bp)
TGTTCTCCGGTGTCGGCGAGAAGAA
LOC_Os03g31630
OsAffx.3383.1.S1_at--785--3611Chr03:18010197..18010221 (25 bp)
CTTGAGTTGGGTGTCTGGGAAACAT
LOC_Os03g31630
OsAffx.3383.1.S1_at--471--5531Chr03:18010215..18010239 (25 bp)
GAAACATGTCATGCGCAGTCCGATT
LOC_Os03g31630
Target Sequence 
GATCCTGGACGAACACCACGAGAGGGCGACCGCGTTCCTCACCGGCGCCGGCCACATCAACCCGGCGAGGGCCGCCGACC
CAGGCCTAGTGTACGACATCGCCGTCGCTGACTACGCCGGCTACATCTGCGCGCTGCTCGGAGACGCCGGGCTGGGGACG
ATCGTGCGCAACGAGAGCTTGAGCTGCGGGAAGCTGGACAAGAACAAGATACCGGAGGCGCAGCTCAACTACCCGACCAT
CACGGTGCCGCTGCCGCGGTCGTCGTCGTCGGCGGCGCCGCCGCCGTTCACGGTGAACCGGACGGTGACGAACGTCGGGC
CGGCCAGGTCGACCTACACGATGAAGCTGGAGATACCCAGGTCGCTGACGATGCGTGTGTCGCCGGAGAAGCTGGTGTTC
TCCGGTGTCGGCGAGAAGAAGGGCTTCAGCGTGACGGTGAGTGGCGGCGGCGGCGGCGGCGAGGTGGTGGAGGGAAGCTT
GAGTTGGGTGTCTGGGAAACATGTCATGCGCAGTCCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis