Browse Element(s) Details


OsAffx.3425.1.S1_at

Description tigr:9631.m03618
TID=OsAffx.3425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g076201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g303901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g205701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g239501/11hypothetical protein
LOC_Os05g512801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g290301/11hypothetical protein
LOC_Os04g301201/11hypothetical protein
LOC_Os10g041401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g454801/11hypothetical protein
LOC_Os09g024801/11hypothetical protein
LOC_Os04g221801/11hypothetical protein
LOC_Os05g351201/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g282501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g269301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g345001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g231901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g138901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g230201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g133001/11hypothetical protein
LOC_Os09g200601/11hypothetical protein
LOC_Os03g578201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g099001/11hypothetical protein
LOC_Os06g210801/11retrotransposon protein, putative, unclassified
LOC_Os12g255301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g409301/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07570NANA2+3916725..3922880transposon protein, putative, unclassified
LOC_Os02g07580OsAffx.24149.1.S1_s_at11/112+3927873..3928668hypothetical protein
LOC_Os02g07580Os.23520.1.A1_at4/112+3927873..3928668hypothetical protein
LOC_Os02g07590OsAffx.11929.1.S1_at10/112+3929703..3930203NA
LOC_Os02g07600OsAffx.24150.1.S1_x_at11/112+3932581..3933219Kunitz-type trypsin inhibitor, putative
LOC_Os02g07610Os.26886.1.S1_x_at10/112+3935178..3938525transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07610Os.26886.3.S1_x_at5/112+3935178..3938525transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07610OsAffx.16244.1.S1_x_at1/112+3935178..3938525transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620Os.26886.2.S1_s_at11/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620Os.26886.6.S1_s_at11/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620OsAffx.16467.1.S1_at9/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620OsAffx.3425.1.S1_at1/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07630Os.24697.1.A1_s_at11/112+3950336..3955896Copper-transporting ATPase RAN1, putative, expressed
LOC_Os02g07640OsAffx.24152.1.S1_at11/112+3964023..3965483hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3425.1.S1_at--308--1474Chr09:1912124..1912148 (25 bp)
AGAAGGAGTGGTCCACGTACGCCAC
NONE
OsAffx.3425.1.S1_at--108--1113Chr11:27524519..27524543 (25 bp)
AGTGGTCCACGTACGCCACGCCTGG
NONE
OsAffx.3425.1.S1_at--604--9493Chr11:27524479..27524501 (23 bp)
TCTGCCTCTGCCTGTCGGTGCCGGA
NONE
OsAffx.3425.1.S1_at--868--7192Chr04:17019874..17019898 (25 bp)
GTCGGTGCCGGATCCGATCTATGAA
NONE
OsAffx.3425.1.S1_at--164--4493Chr09:1912191..1912215 (25 bp)
GCCGGATCCGATCTATGAACTACTC
NONE
OsAffx.3425.1.S1_at--693--7973Chr09:1912194..1912218 (25 bp)
GGATCCGATCTATGAACTACTCTTC
NONE
OsAffx.3425.1.S1_at--377--553Chr09:1912196..1912220 (25 bp)
ATCCGATCTATGAACTACTCTTCCC
NONE
OsAffx.3425.1.S1_at--557--8053Chr11:27524364..27524388 (25 bp)
GGAGAAGGAGGCCTACCTCCGCGTC
NONE
OsAffx.3425.1.S1_at--27--5513Chr11:27524339..27524363 (25 bp)
GAACAGCGCGTACTCGCCGCCAAAC
NONE
OsAffx.3425.1.S1_at--1113--4393Chr09:1912329..1912353 (25 bp)
GCCAAACCATCTCCGCCGGAGGTTG
NONE
OsAffx.3425.1.S1_at--478--68931Chr11:12759890..12760023 (25 bp)
GTATAGAGAAAAGGGCACAATAACC
LOC_Os11g23020
Target Sequence 
AGAAGGAGTGGTCCACGTACGCCACGCCTGGTTACCCTCGCCTCCTCCTCTGCCTCTGCCTGTCGGTGCCGGATCCGATC
TATGAACTACTCTTCCCCACCTCCTCCTTCCTCGCTCGCAGCCTCGACGGCGCCGCCTCCACCAGCGATACCGCCGGCAG
CGGGAGAAGGAGGCCTACCTCCGCGTCGAACAGCGCGTACTCGCCGCCAAACCATCTCCGCCGGAGGTTGAGGAGGAAGA
GGATGCAGATTCAGATGGGGACTTGGCGGCGGCTAGGGTTGGGGATTGCTTCGTTTGATTTTGGATCGGCTAGGGTTGGG
GAACATGGGAAGACAGGACATGACACCCTCATCCACAAAAAAGACTTCCCGGTGAAGCAACAAATAGGTGACCAGTGCGG
ATTCCATGTGTGCCACAACATGCGCCTTCTGTATAGAGAAAAGGGCACAATAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis