Browse Element(s) Details


OsAffx.350.1.S1_s_at

Description tigr:9629.m00127
TID=OsAffx.350.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0216011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02120Os.29115.1.S1_at11/111+609366..612433MOTHER of FT and TF1 protein, putative, expressed
LOC_Os01g02130Os.30376.1.S1_at11/111+617374..618318expressed protein
LOC_Os01g02140NANA1+620870..621289expressed protein
LOC_Os01g02150Os.1653.1.S1_at11/111+622788..623811expressed protein
LOC_Os01g02160OsAffx.350.1.S1_s_at11/111+628895..629715expressed protein
LOC_Os01g02170Os.33335.1.S1_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53043.1.S1_x_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53043.1.S1_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53712.1.S1_x_at1/111+630813..636111expressed protein
LOC_Os01g02180Os.37685.1.A1_at11/111+637399..641069expressed protein
LOC_Os01g02180Os.5620.2.S1_s_at10/111+637399..641069expressed protein
LOC_Os01g02190Os.31744.1.S1_at10/111+642417..643524Major intrinsic protein, expressed
LOC_Os01g02200Os.1660.1.S1_at11/111+644940..648683armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g02200Os.54720.1.S1_at1/111+644940..648683armadillo/beta-catenin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.350.1.S1_s_at--231--7211Chr01:629207..629231 (25 bp)
GTCGTCGTCGTACTGGAACTACCCA
LOC_Os01g02160
OsAffx.350.1.S1_s_at--705--8011Chr01:629244..629268 (25 bp)
GGAGGAGGCGGCTACATTCCCTACT
LOC_Os01g02160
OsAffx.350.1.S1_s_at--29--911Chr01:629249..629273 (25 bp)
AGGCGGCTACATTCCCTACTACCAG
LOC_Os01g02160
OsAffx.350.1.S1_s_at--46--6991Chr01:629351..629375 (25 bp)
GTACCCTTGGTACTACAGGTCGCCG
LOC_Os01g02160
OsAffx.350.1.S1_s_at--773--3731Chr01:629355..629379 (25 bp)
CCTTGGTACTACAGGTCGCCGCCGT
LOC_Os01g02160
OsAffx.350.1.S1_s_at--209--3851Chr01:629418..629442 (25 bp)
CTGCTTGCCTCGGTGGCCGTGGTAA
LOC_Os01g02160
OsAffx.350.1.S1_s_at--695--4271Chr01:629425..629449 (25 bp)
CCTCGGTGGCCGTGGTAACAGCTGC
LOC_Os01g02160
OsAffx.350.1.S1_s_at--600--7552Chr04:33939502..33939640 (24 bp)
GTGGCCGTGGTAACAGCTGCTGCTG
NONE
OsAffx.350.1.S1_s_at--110--9111Chr01:629450..629474 (25 bp)
TGCTGCTGCTTTAATTACCGTGTTT
LOC_Os01g02160
OsAffx.350.1.S1_s_at--780--3811Chr01:629452..629476 (25 bp)
CTGCTGCTTTAATTACCGTGTTTTA
LOC_Os01g02160
OsAffx.350.1.S1_s_at--17--9751Chr01:629461..629485 (25 bp)
TAATTACCGTGTTTTAATGTAGCTC
LOC_Os01g02160
Target Sequence 
GTCGTCGTCGTACTGGAACTACCCACCGCCGCAGGGCGGAGGAGGCGGCTACATTCCCTACTACCAGCCTCCCGCCGGCG
GTGGCGGCGGCGGCGGCGGTTTCAACTACCCGGCGCCGCCTCCGCCCAACCCCATCGTGCCGTGGTACCCTTGGTACTAC
AGGTCGCCGCCGTCGTCGCCGGCGACGGCGGTGACGGCGCGGGGGCGTTCGCTGCTTGCCTCGGTGGCCGTGGTAACAGC
TGCTGCTGCTGCTTTAATTACCGTGTTTTAATGTAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.350.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis