Browse Element(s) Details


OsAffx.3506.1.S1_at

Description tigr:9631.m04237
TID=OsAffx.3506.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=down syndrome critical region protein 5 homolog.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4390011/11Down syndrome critical region protein 5 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43870OsAffx.3505.1.S1_at11/113+24563639..24564169hypothetical protein
LOC_Os03g43880OsAffx.25525.1.S1_at11/113+24570524..24572122Patatin-like phospholipase family protein, expressed
LOC_Os03g43890Os.37345.1.S1_s_at11/113+24575491..24583690WD-40 repeat protein MSI1, putative, expressed
LOC_Os03g43890Os.37345.1.S1_at11/113+24575491..24583690WD-40 repeat protein MSI1, putative, expressed
LOC_Os03g43900OsAffx.3506.1.S1_at11/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.57436.1.S1_x_at10/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.57436.1.S1_at8/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43900Os.27446.3.S1_x_at1/113+24584577..24588899Down syndrome critical region protein 5 homolog, putative, expressed
LOC_Os03g43910Os.22835.1.S1_at10/113+24592377..24595650expressed protein
LOC_Os03g43910Os.57436.1.S1_x_at4/113+24592377..24595650expressed protein
LOC_Os03g43910Os.53017.1.S1_at1/113+24592377..24595650expressed protein
LOC_Os03g43920OsAffx.25526.1.S1_at11/113+24597465..24598804hypothetical protein
LOC_Os03g43930Os.14126.1.S1_at11/113+24606047..24611849class III HD-Zip protein 4, putative, expressed
LOC_Os03g43940OsAffx.25527.1.S1_at11/113+24613422..24613730hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3506.1.S1_at--558--7851Chr03:24587354..24587378 (25 bp)
GGTAGAGAGGCCCATCGAACCTATT
LOC_Os03g43900
OsAffx.3506.1.S1_at--490--4551Chr03:24587345..24587369 (25 bp)
GCCCATCGAACCTATTTCAGACATT
LOC_Os03g43900
OsAffx.3506.1.S1_at--304--10331Chr03:24587331..24587355 (25 bp)
TTTCAGACATTAGCATTGACCAGAT
LOC_Os03g43900
OsAffx.3506.1.S1_at--1046--4931Chr03:24587319..24587343 (25 bp)
GCATTGACCAGATAAACAGTCTTAT
LOC_Os03g43900
OsAffx.3506.1.S1_at--13--9831Chr03:24587307..24587331 (25 bp)
TAAACAGTCTTATGTTTGGTGATCT
LOC_Os03g43900
OsAffx.3506.1.S1_at--807--7751Chr03:24587290..24587314 (25 bp)
GGTGATCTGCAGAAAAGAGCCCAAC
LOC_Os03g43900
OsAffx.3506.1.S1_at--547--2431Chr03:24587278..24587302 (25 bp)
AAAAGAGCCCAACAATTCTGAATTG
LOC_Os03g43900
OsAffx.3506.1.S1_at--315--9011Chr03:24587260..24587284 (25 bp)
TGAATTGTAGGATCAGTGCTGCTTC
LOC_Os03g43900
OsAffx.3506.1.S1_at--713--6931Chr03:24587254..24587278 (25 bp)
GTAGGATCAGTGCTGCTTCTGCAAC
LOC_Os03g43900
OsAffx.3506.1.S1_at--418--2071Chr03:24587231..24587255 (25 bp)
ACTTGATAGGCTTTTGTGTGACTGA
LOC_Os03g43900
OsAffx.3506.1.S1_at--914--10831Chr03:24587218..24587242 (25 bp)
TTGTGTGACTGAGCACTGAATTTAT
LOC_Os03g43900
Target Sequence 
GGTAGAGAGGCCCATCGAACCTATTTCAGACATTAGCATTGACCAGATAAACAGTCTTATGTTTGGTGATCTGCAGAAAA
GAGCCCAACAATTCTGAATTGTAGGATCAGTGCTGCTTCTGCAACTTGATAGGCTTTTGTGTGACTGAGCACTGAATTTA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis