Browse Element(s) Details


OsAffx.3630.1.S1_at

Description tigr:9631.m05616
TID=OsAffx.3630.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5723010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57190Os.19844.1.S1_at11/113+32553330..32557193TCP family transcription factor containing protein, expressed
LOC_Os03g57200Os.12200.1.S1_s_at11/113+32558178..32559224glutathione S-transferase GSTU1, putative, expressed
LOC_Os03g57210Os.9472.1.S1_at11/113+32563547..32566812expressed protein
LOC_Os03g57220Os.12394.1.S1_at10/113+32567478..32571470expressed protein
LOC_Os03g57230OsAffx.3630.1.S1_at10/113+32571688..32572681hypothetical protein
LOC_Os03g57230OsAffx.23380.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230Os.20851.1.A1_x_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230OsAffx.5035.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230Os.55580.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57240Os.52475.1.S1_at10/113+32584630..32585843expressed protein
LOC_Os03g57240Os.52475.1.S1_x_at10/113+32584630..32585843expressed protein
LOC_Os03g57260Os.49626.1.S1_at11/113+32595020..32599572GRF zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3630.1.S1_at--744--5991Chr03:32572627..32572651 (25 bp)
GAGACCATATTTCGCTCGGCGGCTG
LOC_Os03g57230
OsAffx.3630.1.S1_at--262--4331Chr03:32572623..32572647 (25 bp)
CCATATTTCGCTCGGCGGCTGTTAA
LOC_Os03g57230
OsAffx.3630.1.S1_at--1125--10611Chr03:32572617..32572641 (25 bp)
TTCGCTCGGCGGCTGTTAACAGTGA
LOC_Os03g57230
OsAffx.3630.1.S1_at--727--4133Chr02:1869721..1869808 (25 bp)
CGCTCGGCGGCTGTTAACAGTGAAA
NONE
OsAffx.3630.1.S1_at--646--2491Chr09:5000119..5000228 (24 bp)
AACAGTGAAATTTGGATCGTAATGC
NONE
OsAffx.3630.1.S1_at--785--10231Chr03:32571773..32571794 (22 bp)
TTTGGATCGTAATGCAAGAATTTTT
LOC_Os03g57230
OsAffx.3630.1.S1_at--714--2731Chr03:32571758..32571782 (25 bp)
AAGAATTTTTCAACATGTGCCCAAG
LOC_Os03g57230
OsAffx.3630.1.S1_at--2--5231Chr03:32571756..32571780 (25 bp)
GAATTTTTCAACATGTGCCCAAGAC
LOC_Os03g57230
OsAffx.3630.1.S1_at--405--2491Chr03:32571747..32571771 (25 bp)
AACATGTGCCCAAGACACCGGAATA
LOC_Os03g57230
OsAffx.3630.1.S1_at--346--7291Chr03:32571743..32571767 (25 bp)
TGTGCCCAAGACACCGGAATAACTT
LOC_Os03g57230
OsAffx.3630.1.S1_at--757--4131Chr03:32571739..32571763 (25 bp)
CCCAAGACACCGGAATAACTTGCGG
LOC_Os03g57230
Target Sequence 
GAGACCATATTTCGCTCGGCGGCTGTTAACAGTGAAATTTGGATCGTAATGCAAGAATTTTTCAACATGTGCCCAAGACA
CCGGAATAACTTGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis