Browse Element(s) Details


OsAffx.3737.1.S1_at

Description tigr:9632.m00627
TID=OsAffx.3737.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0714011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07110Os.15125.1.S1_x_at7/114+3753352..3755610expressed protein
LOC_Os04g07110Os.26930.1.S2_x_at1/114+3753352..3755610expressed protein
LOC_Os04g07120Os.39852.1.S1_at2/114+3767519..3768592Transposable element protein, putative, Retrotrans_gag
LOC_Os04g07120OsAffx.18193.1.S1_at1/114+3767519..3768592Transposable element protein, putative, Retrotrans_gag
LOC_Os04g07120OsAffx.13644.1.S1_at1/114+3767519..3768592Transposable element protein, putative, Retrotrans_gag
LOC_Os04g07130OsAffx.13703.1.S1_x_at11/114+3770426..3771483hypothetical protein
LOC_Os04g07140OsAffx.3737.1.S1_at11/114+3774522..3775592hypothetical protein
LOC_Os04g07150OsAffx.25907.2.S1_at11/114+3779144..3781403hypothetical protein
LOC_Os04g07150OsAffx.25907.2.S1_x_at11/114+3779144..3781403hypothetical protein
LOC_Os04g07150OsAffx.25907.1.S1_x_at2/114+3779144..3781403hypothetical protein
LOC_Os04g07160NANA4+3786839..3790171transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170Os.47463.1.S1_x_at4/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170Os.14491.2.S1_x_at4/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170OsAffx.13703.1.S1_x_at3/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170OsAffx.25916.1.S1_at2/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170OsAffx.13720.1.S1_at1/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3737.1.S1_at--586--2071Chr04:3775071..3775545 (25 bp)
ACATAAGGGTATTCACGGCCACCAT
LOC_Os04g07140
OsAffx.3737.1.S1_at--621--9451Chr04:3775041..3775065 (25 bp)
TCGGCTCCCTAGCAGCGTAGAACGA
LOC_Os04g07140
OsAffx.3737.1.S1_at--121--4211Chr04:3774961..3774985 (25 bp)
CCCCTGGCAGATGGGTTGAGACAGC
LOC_Os04g07140
OsAffx.3737.1.S1_at--355--811Chr04:3774951..3774975 (25 bp)
ATGGGTTGAGACAGCCGCCATCGAG
LOC_Os04g07140
OsAffx.3737.1.S1_at--118--5651Chr04:3774942..3774966 (25 bp)
GACAGCCGCCATCGAGCTGTTGCTG
LOC_Os04g07140
OsAffx.3737.1.S1_at--1136--4752Chr04:3774918..3774942 (25 bp)
GCTGCACGGGTGGTTGACAACAACG
LOC_Os04g07140
OsAffx.3737.1.S1_at--113--5631Chr04:3774903..3774927 (25 bp)
GACAACAACGAGCAGCGGCTTGTAT
LOC_Os04g07140
OsAffx.3737.1.S1_at--476--1631Chr04:3774890..3774914 (25 bp)
AGCGGCTTGTATAGAGCGAGACGAC
LOC_Os04g07140
OsAffx.3737.1.S1_at--1102--2011Chr04:3774745..3774769 (25 bp)
ACTACAAGAGGGACGGTGCGGATCT
LOC_Os04g07140
OsAffx.3737.1.S1_at--860--10791Chr04:3774586..3774610 (25 bp)
TTGTCTCTTCTCCAGTAGGCGGCGA
LOC_Os04g07140
OsAffx.3737.1.S1_at--425--9571Chr04:3774581..3774605 (25 bp)
TCTTCTCCAGTAGGCGGCGAGGCTT
LOC_Os04g07140
Target Sequence 
ACATAAGGGTATTCACGGCCACCATGGCGCTCGGCTCCCTAGCAGCGTAGAACGAGGTGGGCGGGGCAAGGCGGCGCTGC
TCTCCCTCCCCATCTCCGCCGCTCCTCCTCCCCCTGGCAGATGGGTTGAGACAGCCGCCATCGAGCTGTTGCTGCTGCAC
GGGTGGTTGACAACAACGAGCAGCGGCTTGTATAGAGCGAGACGACGGCCTCGGCGGCTTAGAGTAGGGGACAATGATGA
TCTCGGCGGCGGCTCCCCTCTCCTCCTTCCAAGGCCGGCGCCCCTTCTTCCCTGGCCGGTGCGTCGACGAGCTCGCCGGC
GTGAGGACTACAAGAGGGACGGTGCGGATCTTGGTGGCATGGAGCAGGACGACGCAGATCTGGCGGTGGGCCTCGGCGGC
GGAGGACTCCGAGGTGGGACTTGGTGGCGGCACGGTGGAGTGGCCTCGCCGCCGGCCAGCCTACCGCCACTAGCTCCACC
TTCCGTTGTCTCTTCTCCAGTAGGCGGCGAGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis