Browse Element(s) Details


OsAffx.3745.1.S1_at

Description tigr:9632.m00731
TID=OsAffx.3745.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0818010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08094NANA4+4311319..4311850NA
LOC_Os04g08110Os.54504.1.S1_x_at1/114+4313792..4314583hypothetical protein
LOC_Os04g08110OsAffx.25922.2.S1_at1/114+4313792..4314583hypothetical protein
LOC_Os04g08120OsAffx.25936.1.S1_s_at11/114+4317877..4319054hypothetical protein
LOC_Os04g08120OsAffx.25936.7.S1_s_at11/114+4317877..4319054hypothetical protein
LOC_Os04g08120OsAffx.25936.2.S1_x_at8/114+4317877..4319054hypothetical protein
LOC_Os04g08120OsAffx.25936.5.S1_x_at2/114+4317877..4319054hypothetical protein
LOC_Os04g08130NANA4+4320076..4321399transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08150Os.10827.1.S1_x_at8/114+4325527..4329146transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08150Os.46055.2.S1_x_at6/114+4325527..4329146transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08150OsAffx.18122.1.S1_x_at1/114+4325527..4329146transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08160OsAffx.25922.2.S1_at11/114+4330906..4332201hypothetical protein
LOC_Os04g08170OsAffx.30829.2.S1_x_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08170OsAffx.28048.2.S1_x_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08170OsAffx.28048.2.S1_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08170OsAffx.30829.2.S1_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08180OsAffx.3745.1.S1_at10/114+4336278..4339342expressed protein
LOC_Os04g08190Os.23157.1.S1_at11/114+4340284..4342757expressed protein
LOC_Os04g08200OsAffx.25921.2.S1_at11/114+4345963..4348188hypothetical protein
LOC_Os04g08210Os.27639.1.S1_x_at8/114+4350096..4355546transposon protein, putative, unclassified
LOC_Os04g08210OsAffx.8980.1.S1_at6/114+4350096..4355546transposon protein, putative, unclassified
LOC_Os04g08210Os.53731.1.S1_at2/114+4350096..4355546transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3745.1.S1_at--5--891Chr04:4336431..4336452 (22 bp)
AGGCCAATCTCGGTTCACAGGTTTG
LOC_Os04g08180
OsAffx.3745.1.S1_at--560--5751Chr04:4336562..4336586 (25 bp)
GACGGATTGTGATTATTCTGGTTGT
LOC_Os04g08180
OsAffx.3745.1.S1_at--175--9331Chr04:4336613..4336636 (24 bp)
TCGCGGGTTGCTGCTCCATTGGAGT
LOC_Os04g08180
OsAffx.3745.1.S1_at--1119--6591Chr04:4336871..4336895 (25 bp)
GATTGTGATACTAATGGAGGCGCAT
LOC_Os04g08180
OsAffx.3745.1.S1_at--1096--6211NONE
GAGGCGCATTTGAAGTTGGTTCCAT
NONE
OsAffx.3745.1.S1_at--85--10811Chr04:4338377..4338401 (25 bp)
TTGGTTCCATGGGACAATCCTTTTT
LOC_Os04g08180
OsAffx.3745.1.S1_at--229--1591Chr04:4338845..4338869 (25 bp)
AGCTCGTTGATGCAGCACTGTCGGA
LOC_Os04g08180
OsAffx.3745.1.S1_at--479--6391Chr04:4338876..4338900 (25 bp)
GATCGAATTCGTCCGTGTTGTTGAA
LOC_Os04g08180
OsAffx.3745.1.S1_at--769--10291Chr04:4338919..4338943 (25 bp)
TTTCCAAATGTTCCAAGTGATCGCA
LOC_Os04g08180
OsAffx.3745.1.S1_at--212--5211Chr04:4338948..4338972 (25 bp)
GAATTGTGTGCCAAATCCGTTGAAT
LOC_Os04g08180
OsAffx.3745.1.S1_at--1035--5471Chr04:4338976..4339310 (25 bp)
GAACATGCAGCGTGTAATATCCCTG
LOC_Os04g08180
Target Sequence 
AGGCCAATCTCGGTTCACAGGTTTGTGACGGATTGTGATTATTCTGGTTGTGAAATTTCTGGTGATGAGGACTCCGGTCG
CGGGTTGCTGCTCCATTGGAGTTCGAAACATGATAGAAGCAACAACGATTGTGATACTAATGGAGGCGCATTTGAAGTTG
GTTCCATGGGACAATCCTTTTTTTATGTTGATAGTCGGTACTGGATTATAAAGGGCAAGGTGAGGTTTGAGGCGAAGGGG
GCATCTGTGAGACCAGAGGAGGAGCTCGTTGATGCAGCACTGTCGGAGACAGCGATCGAATTCGTCCGTGTTGTTGAAGG
CTTTGTTGTTTTGGCATTTCCAAATGTTCCAAGTGATCGCAAGGAGAATTGTGTGCCAAATCCGTTGAATTTTGAACATG
CAGCGTGTAATATCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis