Browse Element(s) Details


OsAffx.3763.1.S1_s_at

Description tigr:9632.m00914
TID=OsAffx.3763.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1042011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10390OsAffx.25108.4.S1_s_at11/114+5612236..5614112transposon protein, putative, unclassified
LOC_Os04g10390OsAffx.25108.1.S1_x_at5/114+5612236..5614112transposon protein, putative, unclassified
LOC_Os04g10400Os.49531.1.S1_at9/114+5616756..5620495Electron transfer flavoprotein beta-subunit, putative, expressed
LOC_Os04g10410OsAffx.25959.1.S1_at11/114+5624937..5629621Amidase family protein, expressed
LOC_Os04g10420Os.54559.1.S1_at11/114+5635855..5646506expressed protein
LOC_Os04g10420Os.37514.1.S1_at11/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.3763.1.S1_s_at11/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.23335.1.S1_x_at8/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.20160.1.S1_x_at1/114+5635855..5646506expressed protein
LOC_Os04g10420Os.54153.1.S1_at1/114+5635855..5646506expressed protein
LOC_Os04g10434Os.53788.1.S1_at11/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10434OsAffx.23696.1.S1_x_at1/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10434OsAffx.988.1.S1_at1/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10450OsAffx.13751.1.S1_at10/114+5663294..5664870hypothetical protein
LOC_Os04g10450OsAffx.28563.1.S1_x_at1/114+5663294..5664870hypothetical protein
LOC_Os04g10460OsAffx.25959.2.S1_at11/114+5666494..5669400Amidase family protein, expressed
LOC_Os04g10470NANA4+5670693..5671064hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3763.1.S1_s_at--505--1891Chr04:5639750..5639774 (25 bp)
ACACTGAATCGAAAAATCCTAGCTC
LOC_Os04g10420
OsAffx.3763.1.S1_s_at--430--571Chr04:5639735..5639759 (25 bp)
ATCCTAGCTCAAATGTGCTATCTGG
LOC_Os04g10420
OsAffx.3763.1.S1_s_at--584--1431Chr04:5638903..5638927 (25 bp)
AGAACTCTCTTTTCAGGCTACGTCA
LOC_Os04g10420
OsAffx.3763.1.S1_s_at--1046--3711Chr04:5638877..5638901 (25 bp)
CTACCAAAACGTTCGAGAAGCTTAT
LOC_Os04g10420
OsAffx.3763.1.S1_s_at--612--6711Chr04:5638575..5638891 (25 bp)
GTTCGAGAAGCTTATGATGCTGGCA
LOC_Os04g10420
OsAffx.3763.1.S1_s_at--454--6351Chr04:5638560..5638581 (22 bp)
GATGCTGGCAGATCAAAATTTGAGA
LOC_Os04g10420
OsAffx.3763.1.S1_s_at--642--2251Chr04:5638545..5638569 (25 bp)
AAATTTGAGAGCTTATTCTCACTCG
LOC_Os04g10420
OsAffx.3763.1.S1_s_at--170--4231Chr04:5638002..5638026 (25 bp)
TCCAGGAAATAGCTTTCGGGCCCTT
LOC_Os04g10420
OsAffx.3763.1.S1_s_at--284--10251Chr04:5637989..5638013 (25 bp)
TTTCGGGCCCTTGTCCATAGTGCAG
LOC_Os04g10420
OsAffx.3763.1.S1_s_at--1013--3611Chr04:5637980..5638004 (25 bp)
CTTGTCCATAGTGCAGCATCTACTG
LOC_Os04g10420
OsAffx.3763.1.S1_s_at--704--4971Chr04:5637965..5637989 (25 bp)
GCATCTACTGCATCAAAACTAGCAA
LOC_Os04g10420
Target Sequence 
ACACTGAATCGAAAAATCCTAGCTCAAATGTGCTATCTGGGGTAAACACTGGGAGCAAACAAGAAAAACCACCAAAGAGA
ACTCTCTTTTCAGGCTACGTCAGCTACCAAAACGTTCGAGAAGCTTATGATGCTGGCAGATCAAAATTTGAGAGCTTATT
CTCACTCGGGCATGACCGCACTAAACTTGATAAACTTTATATGAGGGGCCCTGAAGGACGTGGAGAAGTTGAAGTAGCTG
TTTCTGGAATAGCAGATCAGAGCCATGAGAGATCAAAGAAAGATCCAGGAAATAGCTTTCGGGCCCTTGTCCATAGTGCA
GCATCTACTGCATCAAAACTAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3763.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis