Browse Element(s) Details


OsAffx.3772.1.S1_at

Description tigr:9632.m01080
TID=OsAffx.3772.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1205011/11hypothetical protein
LOC_Os12g086601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12020OsAffx.25991.1.S1_at11/114+6578295..6579432hypothetical protein
LOC_Os04g12030Os.31312.2.S1_x_at5/114+6582691..6585950retrotransposon protein, putative, unclassified
LOC_Os04g12030Os.31312.5.S1_x_at4/114+6582691..6585950retrotransposon protein, putative, unclassified
LOC_Os04g12040NANA4+6586741..6592739retrotransposon protein, putative, unclassified
LOC_Os04g12050OsAffx.3772.1.S1_at11/114+6602237..6603133hypothetical protein
LOC_Os04g12060OsAffx.3773.1.S1_x_at11/114+6607219..6610973hypothetical protein
LOC_Os04g12060OsAffx.3773.1.S1_at11/114+6607219..6610973hypothetical protein
LOC_Os04g12070OsAffx.25992.1.S1_x_at11/114+6612348..6612695hypothetical protein
LOC_Os04g12070OsAffx.25992.1.S1_at11/114+6612348..6612695hypothetical protein
LOC_Os04g12080Os.18067.1.S1_at11/114+6614014..6618847Protein kinase domain containing protein, expressed
LOC_Os04g12080OsAffx.20742.3.S1_x_at1/114+6614014..6618847Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3772.1.S1_at--787--8311Chr04:6602780..6602804 (25 bp)
TGGGTTCCTAATAGAAACTGTACGG
LOC_Os04g12050
OsAffx.3772.1.S1_at--953--2551Chr04:6602765..6602789 (25 bp)
AACTGTACGGGAGCTGACTTCTATA
LOC_Os04g12050
OsAffx.3772.1.S1_at--729--1911Chr04:6602759..6602783 (25 bp)
ACGGGAGCTGACTTCTATAATGAGT
LOC_Os04g12050
OsAffx.3772.1.S1_at--395--6052Chr12:4394368..4394387 (20 bp)
GAGTTCTTCCTTGTCACCTAGAAGG
LOC_Os12g08660
OsAffx.3772.1.S1_at--100--9672Chr10:11115148..11115171 (24 bp)
TCACCTAGAAGGGAACGACGTTGTC
NONE
OsAffx.3772.1.S1_at--297--5771Chr04:6602644..6602668 (25 bp)
GACGTTGTCATTCAATACAGTCCAA
LOC_Os04g12050
OsAffx.3772.1.S1_at--1033--2031Chr04:6602620..6602644 (25 bp)
ACTATCGTGGTTAATCTTATCTCTG
LOC_Os04g12050
OsAffx.3772.1.S1_at--981--8571Chr04:6602613..6602637 (25 bp)
TGGTTAATCTTATCTCTGAGTCTTT
LOC_Os04g12050
OsAffx.3772.1.S1_at--757--10631Chr04:6602584..6602608 (25 bp)
TTCGCTTACCTAAGCAATAAGGCAG
LOC_Os04g12050
OsAffx.3772.1.S1_at--1034--2751Chr04:6602493..6602517 (25 bp)
AAGACGTACCTGTCTACTTCGAAGA
LOC_Os04g12050
OsAffx.3772.1.S1_at--224--9431Chr04:6602412..6602436 (25 bp)
TCGGGCTCCCTATTGAGCAACTCCT
LOC_Os04g12050
Target Sequence 
TGGGTTCCTAATAGAAACTGTACGGGAGCTGACTTCTATAATGAGTGATGAATGTCTAAGAGAGGCAGAGCTTTCATCCG
AAGTAACTCGGATAAATACCGCTCCCCGAGTTCTTCCTTGTCACCTAGAAGGGAACGACGTTGTCATTCAATACAGTCCA
ACTATCGTGGTTAATCTTATCTCTGAGTCTTTTGCATTCGCTTACCTAAGCAATAAGGCAGTAACCCCGACAAACAAATT
CTTCAAGCACCCAAACGGAAATATCATTGAAGGATTTGGGATTGTGCAAGACGTACCTGTCTACTTCGAAGACAGGAAGG
CAGTCTTGGATTTCTACGTCTTTGAAATCCAAGATTTTGACATTCTAATCGGGCTCCCTATTGAGCAACTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis