Browse Element(s) Details


OsAffx.3774.1.S1_at

Description tigr:9632.m01093
TID=OsAffx.3774.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1218011/11Protein kinase domain containing protein
LOC_Os06g229001/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12140OsAffx.25995.1.S1_at11/114+6663496..6673025expressed protein
LOC_Os04g12150OsAffx.13784.1.S1_at11/114+6675583..6676660hypothetical protein
LOC_Os04g12160OsAffx.25996.1.S1_at11/114+6683892..6684443Aspartic proteinase nepenthesin-2 precursor, putative
LOC_Os04g12170NANA4+6686132..6688798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g12180OsAffx.3774.1.S1_at11/114+6689236..6692022Protein kinase domain containing protein
LOC_Os04g12180OsAffx.20742.3.S1_x_at1/114+6689236..6692022Protein kinase domain containing protein
LOC_Os04g12190OsAffx.15781.5.S1_x_at11/114+6694449..6696402transposase, putative
LOC_Os04g12190OsAffx.15781.4.S1_x_at8/114+6694449..6696402transposase, putative
LOC_Os04g12200OsAffx.25997.1.S1_at10/114+6698571..6700127hypothetical protein
LOC_Os04g12210Os.31613.1.S1_at1/114+6702073..6713823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12210Os.17297.1.S1_at1/114+6702073..6713823retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3774.1.S1_at--178--8651Chr04:6689896..6689920 (25 bp)
TGGGCATGTCTCCACAAAATCAGAT
LOC_Os04g12180
OsAffx.3774.1.S1_at--837--8151Chr04:6689825..6689849 (25 bp)
GGAACAACGGCATTTATGCTTCCAC
LOC_Os04g12180
OsAffx.3774.1.S1_at--45--4911Chr04:6689808..6689832 (25 bp)
GCTTCCACAAGGACAGATTCTTCCG
LOC_Os04g12180
OsAffx.3774.1.S1_at--447--6571Chr04:6689793..6689817 (25 bp)
GATTCTTCCGAATGCATGGACTCCA
LOC_Os04g12180
OsAffx.3774.1.S1_at--1100--8111Chr04:6689776..6689800 (25 bp)
GGACTCCATATATCTACTGAGCTAT
LOC_Os04g12180
OsAffx.3774.1.S1_at--742--4671Chr04:6689505..6689529 (25 bp)
GCGGTGGTACTAATGCTGAGCAGCA
LOC_Os04g12180
OsAffx.3774.1.S1_at--585--4251Chr04:6689405..6689429 (25 bp)
CCGGACATGTGCTGTTGGGTACTGA
LOC_Os04g12180
OsAffx.3774.1.S1_at--282--5771Chr04:6689361..6689385 (25 bp)
GACGTCGGCAATAAGCAGCAGCTAT
LOC_Os04g12180
OsAffx.3774.1.S1_at--1041--10151Chr04:6689339..6689363 (25 bp)
TATCACCTAACCCTGTTTCAGAGAC
LOC_Os04g12180
OsAffx.3774.1.S1_at--738--7372Chr05:13960627..13960768 (25 bp)
GTGACGACCCCTAACAAGACTGGAA
NONE
OsAffx.3774.1.S1_at--360--1394Chr06:12300737..12300942 (25 bp)
AGACTGGAATTTGCGGACCGTCACA
NONE
Target Sequence 
TGGGCATGTCTCCACAAAATCAGATATGTTCAGCTTTGGGGTGATTGTTCTTGAGATGGTGACTGGGAGAAGGAACAACG
GCATTTATGCTTCCACAAGGACAGATTCTTCCGAATGCATGGACTCCATATATCTACTGAGCTATGTATGGGAGAAGTGG
AGGACACGATCGCTGGCGGACGCAGTGGACGCGTCCCTGGGTGGTCGGTACCGTGAAAACGAGGTGCTCAGCTGCGTGCA
GATTGGGTTACTGTGTGTCCAGGAGAATCCAGCCGATAGGCCGGACATTTCAGCGGTGGTACTAATGCTGAGCAGCAACT
CCATGTCGCTGCGGACTCCTTCTAAACCAGCCTTCTTCTTCGGCTCCGGCGGCCTCGCCGTGGATGCTGGCGCCGGACAT
GTGCTGTTGGGTACTGATGGTACAGACGACATTGCTGACGTCGGCAATAAGCAGCAGCTATCACCTAACCCTGTTTCAGA
GACACTAGTACAGATCCTTCCATCTGTGACGACCCCTAACAAGACTGGAATTTGCGGACCGTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis