Browse Element(s) Details


OsAffx.3783.1.S1_at

Description tigr:9632.m01234
TID=OsAffx.3783.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1359011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g13560OsAffx.16467.1.S1_at6/114+7557119..7560582hypothetical protein
LOC_Os04g13560Os.26886.2.S1_s_at2/114+7557119..7560582hypothetical protein
LOC_Os04g13560OsAffx.32199.1.A1_x_at1/114+7557119..7560582hypothetical protein
LOC_Os04g13560OsAffx.23039.1.S1_x_at1/114+7557119..7560582hypothetical protein
LOC_Os04g13560Os.26886.6.S1_s_at1/114+7557119..7560582hypothetical protein
LOC_Os04g13570OsAffx.13805.1.S1_at11/114+7561773..7562096hypothetical protein
LOC_Os04g13580OsAffx.13806.1.S1_at11/114+7567627..7568067hypothetical protein
LOC_Os04g13590OsAffx.3783.1.S1_at11/114+7573234..7574958hypothetical protein
LOC_Os04g13590OsAffx.10309.1.S1_x_at1/114+7573234..7574958hypothetical protein
LOC_Os04g13600OsAffx.25936.1.S1_s_at9/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13600OsAffx.25936.7.S1_s_at7/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13600OsAffx.25936.2.S1_x_at5/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13600OsAffx.25936.5.S1_x_at2/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13610NANA4+7581201..7581815hypothetical protein
LOC_Os04g13620Os.10827.1.S1_x_at7/114+7582424..7585714transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13620Os.46055.2.S1_x_at5/114+7582424..7585714transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13630Os.47463.1.S1_x_at5/114+7586016..7599129transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13630Os.14491.2.S1_x_at4/114+7586016..7599129transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3783.1.S1_at--234--631Chr04:7574383..7574407 (25 bp)
ATGCTGCTTATCTTCGTCTGCGGGA
LOC_Os04g13590
OsAffx.3783.1.S1_at--18--5331Chr04:7574518..7574542 (25 bp)
GAAGTGTTCTGGTACTACGACAAGC
LOC_Os04g13590
OsAffx.3783.1.S1_at--10--4851Chr04:7574616..7574640 (25 bp)
GCTAAGCTTAGATTTCCTCATGGAC
LOC_Os04g13590
OsAffx.3783.1.S1_at--179--9631Chr04:7574633..7574657 (25 bp)
TCATGGACGTGATCCCTGCGAAATC
LOC_Os04g13590
OsAffx.3783.1.S1_at--348--3031Chr04:7574654..7574678 (25 bp)
AATCCTTGCGGCCTGAAACCGATTG
LOC_Os04g13590
OsAffx.3783.1.S1_at--1090--2811Chr04:7574737..7574761 (25 bp)
AAGTTGGCTGAGGTCCATCTTTCCC
LOC_Os04g13590
OsAffx.3783.1.S1_at--1076--3531Chr04:7574752..7574776 (25 bp)
CATCTTTCCCTGATCTATGACTACT
LOC_Os04g13590
OsAffx.3783.1.S1_at--57--3371Chr04:7574781..7574805 (25 bp)
CACCAAGTTTGGAGGCTTCTCGGGT
LOC_Os04g13590
OsAffx.3783.1.S1_at--1067--811Chr04:7574806..7574830 (25 bp)
ATGGTCCTGCTGCATTGTGTGCTGC
LOC_Os04g13590
OsAffx.3783.1.S1_at--1051--6851Chr04:7574850..7574874 (25 bp)
GTTTGTCCTAACCTCTATAGCTGTA
LOC_Os04g13590
OsAffx.3783.1.S1_at--49--311Chr04:7574866..7574890 (25 bp)
ATAGCTGTATCCTTGTTTGTCGTTG
LOC_Os04g13590
Target Sequence 
ATGCTGCTTATCTTCGTCTGCGGGATCGGCAAGTACGCCGAGAGGGCGTGGTATCTCAGGAGAGCAGGCTCACGGGCACC
TGGAAGCAGATCCATCGCCGGCCATGTTACCGGCGCCAGGCGGGAATTCGAACGTGAAGTGTTCTGGTACTACGACAAGC
TGAATTGTATTTTTGTGGAGAATCTTCAGCTACATTTCGAGCTAGTCTTGGAGCTGGCCACCCGGGGCTTCCAGCTAAGC
TTAGATTTCCTCATGGACGTGATCCCTGCGAAATCCTTGCGGCCTGAAACCGATTGGAACGAAGGCCTCGTGGCAAGGAT
CAAATCTTCGGAGAAACGAGCTGATCTGGTATACAAGTTGGCTGAGGTCCATCTTTCCCTGATCTATGACTACTTGTACA
CCAAGTTTGGAGGCTTCTCGGGTATGGTCCTGCTGCATTGTGTGCTGCTACTGCTTCGGCCAGCCATGTTTGTCCTAACC
TCTATAGCTGTATCCTTGTTTGTCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis