Browse Element(s) Details


OsAffx.4.1.S1_at

Description gb:NM_197883.1
DB_XREF= gi:37537125
TID=OsAffx.4.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0027L23.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4259011/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42510Os.46614.2.S1_x_at11/1110+22594459..22602989expressed protein
LOC_Os10g42520Os.46999.1.S1_at11/1110+22605218..22606346expressed protein
LOC_Os10g42540Os.5914.1.S1_at10/1110+22609266..22611217NADH-ubiquinone oxidoreductase, putative, expressed
LOC_Os10g42550Os.9645.1.S1_at10/1110+22613973..22615398inositol phosphate kinase, putative, expressed
LOC_Os10g42550Os.53176.1.S1_at1/1110+22613973..22615398inositol phosphate kinase, putative, expressed
LOC_Os10g42560OsAffx.7895.1.S1_at11/1110+22617981..22618376hypothetical protein
LOC_Os10g42570OsAffx.6.1.S1_at11/1110+22619210..22620469retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42580OsAffx.5.1.S1_at11/1110+22620771..22622736retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42590OsAffx.4.1.S1_at11/1110+22623029..22624138retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42600Os.35344.18.S1_x_at11/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600Os.35344.3.S1_x_at9/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600OsAffx.22940.5.S1_x_at4/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600OsAffx.22940.5.S1_at3/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42610Os.5318.1.S1_a_at11/1110+22634395..22635931expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4.1.S1_at--1047--5511Chr10:22623679..22623703 (25 bp)
GAAAAGACTCTTGACACATTCCACC
LOC_Os10g42590
OsAffx.4.1.S1_at--1151--2831Chr10:22623607..22623631 (25 bp)
AAGTACTCCAAGCTCATTCAGTCGT
LOC_Os10g42590
OsAffx.4.1.S1_at--566--3831Chr10:22623474..22623597 (25 bp)
CTGAAGTCCACAGTTCCTCCAAGGG
LOC_Os10g42590
OsAffx.4.1.S1_at--104--5331Chr10:22623449..22623473 (25 bp)
GAAGGGATCCGGTAGCCGCACACTA
LOC_Os10g42590
OsAffx.4.1.S1_at--484--9991Chr10:22623437..22623461 (25 bp)
TAGCCGCACACTACCTAATGGAAGA
LOC_Os10g42590
OsAffx.4.1.S1_at--849--3451Chr10:22623374..22623398 (25 bp)
CAGTCGCAAGGGTCGCAAGGGCAAC
LOC_Os10g42590
OsAffx.4.1.S1_at--646--5771Chr10:22623331..22623355 (25 bp)
GACGATGCTAGTGGAGGATCCCAAC
LOC_Os10g42590
OsAffx.4.1.S1_at--548--6131Chr10:22623298..22623322 (25 bp)
GAGGGTTGCTACCATTGTGGCTCAA
LOC_Os10g42590
OsAffx.4.1.S1_at--860--4931Chr10:22623269..22623293 (25 bp)
GCATTGGGCACGCAATTGCAACACA
LOC_Os10g42590
OsAffx.4.1.S1_at--280--2871Chr10:22623177..22623201 (25 bp)
AAGTGACTGGAACTGATACCCCTCC
LOC_Os10g42590
OsAffx.4.1.S1_at--1051--8011Chr10:22623137..22623161 (25 bp)
GGAGGTTGATCCCAAGACTGCTGCT
LOC_Os10g42590
Target Sequence 
GAAAAGACTCTTGACACATTCCACCCCAAGAATTCCATGATGCAGGAGCAGTACCGTGAGGCTAAGTACACTAAGTACTC
CAAGCTCATTCAGTCGTTGTTAAACGCTGAAGTCCACAGTTCCTCCAAGGGGAAGGGATCCGGTAGCCGCACACTACCTA
ATGGAAGACACTTCAAGAGGGTCGTCAAGAGGGGCAAGAAGCCCCGCAGTCGCAAGGGTCGCAAGGGCAACCCGGCGAGT
GGCGCTGCTGACGATGCTAGTGGAGGATCCCAACAGGGCGGTGAGGGTTGCTACCATTGTGGCTCAAAGAAGCATTGGGC
ACGCAATTGCAACACAGAACCTCACCTCATTGAGATGTACCAGGATTGGAAGAAGAAGCAGGGGCCGGAAAATCACTTTG
TTAAAGTGACTGGAACTGATACCCCTCCTGCTGATGCTCCCATGGAGGTTGATCCCAAGACTGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis