Browse Element(s) Details


OsAffx.4002.1.S1_s_at

Description tigr:9632.m03427
TID=OsAffx.4002.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3558011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35570Os.11752.1.S1_at11/114+21495027..21500744Regulator of chromosome condensation family protein, expressed
LOC_Os04g35580OsAffx.4002.1.S1_s_at11/114+21505376..21506508expressed protein
LOC_Os04g35590Os.12722.1.S1_at11/114+21508069..21511229thioesterase family protein, expressed
LOC_Os04g35600Os.53966.1.S1_at11/114+21512544..21515611Protein disulfide-isomerase precursor, putative, expressed
LOC_Os04g35610OsAffx.14160.1.S1_at11/114+21516219..21518276pentatricopeptide, putative
LOC_Os04g35620OsAffx.14161.1.S1_at11/114+21519078..21523579expressed protein
LOC_Os04g35620Os.27502.1.S1_at11/114+21519078..21523579expressed protein
LOC_Os04g35620Os.17282.1.S1_at2/114+21519078..21523579expressed protein
LOC_Os04g35630OsAffx.14162.1.S1_at11/114+21527440..21528600hypothetical protein
LOC_Os04g35640Os.2741.4.S1_x_at1/114+21529430..21531771retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4002.1.S1_s_at--526--2811Chr04:21506144..21506168 (25 bp)
AAGATCTTCAGGAGGCTCTTCGTCA
LOC_Os04g35580
OsAffx.4002.1.S1_s_at--1123--6331Chr04:21506241..21506265 (25 bp)
GATGCCGCCATCATTAATTCACGAT
LOC_Os04g35580
OsAffx.4002.1.S1_s_at--320--10491Chr04:21506254..21506278 (25 bp)
TTAATTCACGATCAGCGCGCGGCAT
LOC_Os04g35580
OsAffx.4002.1.S1_s_at--878--551Chr04:21506277..21506301 (25 bp)
ATCCGTACTGCTCTTTGCACGATTA
LOC_Os04g35580
OsAffx.4002.1.S1_s_at--1109--9011Chr04:21506292..21506316 (25 bp)
TGCACGATTAATCGCCTGCAATTAA
LOC_Os04g35580
OsAffx.4002.1.S1_s_at--727--5391Chr04:21506321..21506345 (25 bp)
GAAGCATCGCTAGCTTCTGATGATG
LOC_Os04g35580
OsAffx.4002.1.S1_s_at--436--9831Chr04:21506366..21506390 (25 bp)
TAAATTATAGGCACACGTACGTACG
LOC_Os04g35580
OsAffx.4002.1.S1_s_at--553--1891Chr04:21506380..21506404 (25 bp)
ACGTACGTACGAATTGCTCCTGCAT
LOC_Os04g35580
OsAffx.4002.1.S1_s_at--373--1851Chr04:21506388..21506412 (25 bp)
ACGAATTGCTCCTGCATGCTGATAA
LOC_Os04g35580
OsAffx.4002.1.S1_s_at--396--4751Chr04:21506405..21506429 (25 bp)
GCTGATAACGCCATGTAGCTAGATA
LOC_Os04g35580
OsAffx.4002.1.S1_s_at--61--10051Chr04:21506424..21506448 (25 bp)
TAGATAGGGTTTGTTCAGCAGATAC
LOC_Os04g35580
Target Sequence 
AAGATCTTCAGGAGGCTCTTCGTCATCGAGAAGACCATCTCGTCGTCGTCGTCGGCGGCGGCGTCGGCGTCCGGCCGCCA
TGGGAGTGCGCGCCGGTGATGCCGCCATCATTAATTCACGATCAGCGCGCGGCATCCGTACTGCTCTTTGCACGATTAAT
CGCCTGCAATTAATTAAGAAGCATCGCTAGCTTCTGATGATGCTAATTAAACTGCAGTTAAGTAAATTATAGGCACACGT
ACGTACGAATTGCTCCTGCATGCTGATAACGCCATGTAGCTAGATAGGGTTTGTTCAGCAGATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4002.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis