Browse Element(s) Details


OsAffx.4008.1.S1_at

Description tigr:9632.m03525
TID=OsAffx.4008.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3752011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37440OsAffx.14175.1.S1_at11/114+22093180..22093638hypothetical protein
LOC_Os04g37450Os.57139.1.S1_at11/114+22094083..22094851expressed protein
LOC_Os04g37460Os.12927.1.S1_at11/114+22095005..22097350Glutamate decarboxylase, putative, expressed
LOC_Os04g37470Os.21320.1.S1_at10/114+22097743..22100498NADH dependent 6'-deoxychalcone synthase, putative, expressed
LOC_Os04g37480Os.8600.1.S1_at11/114+22102247..22104485NADH-dependent oxidoreductase 1, putative, expressed
LOC_Os04g37490Os.11816.1.S1_at11/114+22104786..22107807NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os04g37500Os.1215.1.S1_at11/114+22111117..22113470Glutamate decarboxylase, putative, expressed
LOC_Os04g37510OsAffx.26362.1.S1_at11/114+22113602..22114033uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os04g37520OsAffx.4008.1.S1_at11/114+22115957..22118200expressed protein
LOC_Os04g37520Os.49478.1.S1_at1/114+22115957..22118200expressed protein
LOC_Os04g37530OsAffx.26363.1.S1_at11/114+22118427..22120817expressed protein
LOC_Os04g37540Os.17444.1.S1_a_at11/114+22121721..22127414expressed protein
LOC_Os04g37550Os.18235.1.S1_at10/114+22128884..22130725Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g37560OsAffx.14176.1.S1_at11/114+22131351..22131599hypothetical protein
LOC_Os04g37570OsAffx.26364.1.S1_at11/114+22134740..22136134Eukaryotic aspartyl protease family protein
LOC_Os04g37580Os.5960.1.S1_at11/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37580Os.5217.1.S1_at7/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37590OsAffx.14177.1.S1_at11/114+22139652..22142503F-box family protein, putative
LOC_Os04g37600Os.12776.1.S1_at11/114+22143167..22148131Phosphate carrier protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4008.1.S1_at--898--4611Chr04:22116798..22116927 (25 bp)
GCGAGCTCGCGCTTTGCTCCTTGAG
LOC_Os04g37520
OsAffx.4008.1.S1_at--75--10291Chr04:22116915..22116939 (25 bp)
TTTGCTCCTTGAGCCTCGTGACCGG
LOC_Os04g37520
OsAffx.4008.1.S1_at--926--371Chr04:22117031..22117055 (25 bp)
ATCAACAGCCAGGAGCGTGACCACG
LOC_Os04g37520
OsAffx.4008.1.S1_at--819--5871Chr04:22117043..22117067 (25 bp)
GAGCGTGACCACGAGAACCCCAGGA
LOC_Os04g37520
OsAffx.4008.1.S1_at--1020--5951Chr04:22117055..22117079 (25 bp)
GAGAACCCCAGGACGCCCATCAAGG
LOC_Os04g37520
OsAffx.4008.1.S1_at--228--371Chr04:22117073..22117097 (25 bp)
ATCAAGGCGTCCAGCTACTTACACG
LOC_Os04g37520
OsAffx.4008.1.S1_at--23--9371Chr04:22117188..22117212 (25 bp)
TCGACGGCACCAAGATCGTGTCGTT
LOC_Os04g37520
OsAffx.4008.1.S1_at--752--3311Chr04:22117223..22117247 (25 bp)
CACATCTCCTTCCAGAAGAGACAGG
LOC_Os04g37520
OsAffx.4008.1.S1_at--866--8131Chr04:22117946..22117970 (25 bp)
GGACATGGCTCCACGCGCTCTTCAT
LOC_Os04g37520
OsAffx.4008.1.S1_at--1077--4811Chr04:22117962..22117986 (25 bp)
GCTCTTCATGATCGAGTTCTCGCTC
LOC_Os04g37520
OsAffx.4008.1.S1_at--399--711Chr04:22117969..22117993 (25 bp)
ATGATCGAGTTCTCGCTCGTCATGT
LOC_Os04g37520
Target Sequence 
GCGAGCTCGCGCTTTGCTCCTTGAGCCTCGTGACCGGGCTGCTGATCTGCCTCCACAGCGCGGCGAAGATCACGCACAAG
ACGCAGGCGATCACCAGCGTCGCGGCGCAGTGGCACGCCGACGCGACCATCAACAGCCAGGAGCGTGACCACGAGAACCC
CAGGACGCCCATCAAGGCGTCCAGCTACTTACACGCCGCCGGCCCCGTCGTCCCCCAGCCGGCGCCGAACGCGTCGTCCT
CCGGCGACGAGTCCGAGGACGAGACGTCCCCGAGCGACGACGGCCTCGACGGCACCAAGATCGTGTCGTTCCATGCCACC
CACATCTCCTTCCAGAAGAGACAGGCTCTAGTGACCTACCTGGAGAACAACAGGGCGGGGATCACGGTGTTCGGCTTCGT
CGTCGACCGGACATGGCTCCACGCGCTCTTCATGATCGAGTTCTCGCTCGTCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis