Browse Element(s) Details


OsAffx.4023.1.S1_x_at

Description tigr:9632.m03690
TID=OsAffx.4023.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=POT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3903011/11POT family protein
LOC_Os02g370402/11POT family protein, expressed
LOC_Os03g012901/11Nitrate/chlorate transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38980Os.53838.1.S1_at6/114+22934700..22939402pentatricopeptide, putative, expressed
LOC_Os04g38990OsAffx.29482.5.S1_x_at11/114+22940714..22942666hypothetical protein
LOC_Os04g38990OsAffx.29482.3.S1_x_at3/114+22940714..22942666hypothetical protein
LOC_Os04g39000NANA4+22944247..22944735Rf1 protein, mitochondrial precursor, putative
LOC_Os04g39010Os.50287.1.S1_at11/114+22946455..22947228heavy metal-associated domain containing protein, expressed
LOC_Os04g39020Os.26839.1.S1_at11/114+22952409..22957231Betaine-aldehyde dehydrogenase, putative, expressed
LOC_Os04g39030OsAffx.4023.1.S1_x_at11/114+22959561..22963756POT family protein
LOC_Os04g39030Os.22928.1.S1_x_at1/114+22959561..22963756POT family protein
LOC_Os04g39040Os.5519.1.S1_at10/114+22966827..22971686UBX domain containing protein, expressed
LOC_Os04g39050Os.54556.1.S1_at11/114+22971841..22973132expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015706biological_processnitrate transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015112molecular_functionnitrate transporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4023.1.S1_x_at--14--911Chr04:22959963..22959987 (25 bp)
AGGCGTCGCGATGATCAGCGCGTTC
LOC_Os04g39030
OsAffx.4023.1.S1_x_at--676--712Chr04:22959953..22959977 (25 bp)
ATGATCAGCGCGTTCTGGCTGGTGC
LOC_Os04g39030
OsAffx.4023.1.S1_x_at--1017--9172Chr04:22959931..22959955 (25 bp)
TGCCGCAGTTCTTCCTGGTGGGCGC
LOC_Os04g39030
OsAffx.4023.1.S1_x_at--199--8551Chr04:22959877..22959901 (25 bp)
TGGAGTTCTTCATCAGGGAGGCCCC
LOC_Os04g39030
OsAffx.4023.1.S1_x_at--199--4211Chr04:22959855..22959879 (25 bp)
CCCCGAGCGGATGAAGTCCATGAGC
LOC_Os04g39030
OsAffx.4023.1.S1_x_at--981--692Chr03:183562..183581 (20 bp)
ATGAGCACGGGCCTGTTCCTCGCCA
LOC_Os03g01290
OsAffx.4023.1.S1_x_at--1099--1851Chr04:22959724..22959748 (25 bp)
ACGACGGGAGGCTGGACCTGTTCTA
LOC_Os04g39030
OsAffx.4023.1.S1_x_at--1056--8331Chr04:22959715..22959739 (25 bp)
GGCTGGACCTGTTCTACTGGATGCT
LOC_Os04g39030
OsAffx.4023.1.S1_x_at--757--4031Chr04:22959661..22959685 (25 bp)
CGTTCCTGGTGTTCGCGAGCCGGCA
LOC_Os04g39030
OsAffx.4023.1.S1_x_at--39--10611Chr04:22959650..22959674 (25 bp)
TTCGCGAGCCGGCACCAGTACAGGC
LOC_Os04g39030
OsAffx.4023.1.S1_x_at--87--9871Chr04:22959632..22959656 (25 bp)
TACAGGCCGGCGATACTGCCCGCGG
LOC_Os04g39030
Target Sequence 
AGGCGTCGCGATGATCAGCGCGTTCTGGCTGGTGCCGCAGTTCTTCCTGGTGGGCGCCGGCGAGGCGTTCGCGTACGTGG
GGCAGCTGGAGTTCTTCATCAGGGAGGCCCCCGAGCGGATGAAGTCCATGAGCACGGGCCTGTTCCTCGCCACGCTCGCC
ATGGGGTTCTTCCTGAGCAGCCTCCTCGTGTCCGCCGTCGACGCCGCCACGCGGGGCGCGTGGATCCGGGACGGCCTGGA
CGACGGGAGGCTGGACCTGTTCTACTGGATGCTCGCCGCGCTCGGGGTGGCCAACTTCGCGGCGTTCCTGGTGTTCGCGA
GCCGGCACCAGTACAGGCCGGCGATACTGCCCGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4023.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis