Browse Element(s) Details


OsAffx.4098.1.S1_at

Description tigr:9632.m04379
TID=OsAffx.4098.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4553011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45480Os.49266.1.A1_at11/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45480Os.16317.1.S1_at9/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45490Os.7994.1.S1_at11/114+26698804..26701555Elongation factor G, chloroplast precursor, putative, expressed
LOC_Os04g45500OsAffx.14277.1.S1_at11/114+26704183..26704923hypothetical protein
LOC_Os04g45510OsAffx.30150.1.S1_at3/114+26706912..26707253hypothetical protein
LOC_Os04g45520Os.55511.1.S1_at11/114+26712380..26713541Integral membrane protein, expressed
LOC_Os04g45530OsAffx.4098.1.S1_at11/114+26718949..26719543hypothetical protein
LOC_Os04g45540NANA4+26721433..26727660retrotransposon protein, putative, unclassified
LOC_Os04g45550NANA4+26728507..26731261retrotransposon protein, putative, unclassified
LOC_Os04g45560NANA4+26734313..26734822hypothetical protein
LOC_Os04g45570Os.21851.1.S1_at11/114+26735390..26741178expressed protein
LOC_Os04g45580Os.54166.1.S1_at11/114+26743354..26748966kinesin heavy chain, putative, expressed
LOC_Os04g45580Os.20403.2.S1_x_at1/114+26743354..26748966kinesin heavy chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4098.1.S1_at--907--9451Chr04:26718989..26719013 (25 bp)
TCTGGACATTGCTCATCACTGCGGC
LOC_Os04g45530
OsAffx.4098.1.S1_at--489--71Chr04:26718996..26719020 (25 bp)
ATTGCTCATCACTGCGGCGTTGTCG
LOC_Os04g45530
OsAffx.4098.1.S1_at--177--9231Chr04:26719037..26719061 (25 bp)
TCCTTGGTTCTAGCTCAATGGGCGC
LOC_Os04g45530
OsAffx.4098.1.S1_at--506--2971Chr04:26719053..26719077 (25 bp)
AATGGGCGCTGGATTTGGTGACCCT
LOC_Os04g45530
OsAffx.4098.1.S1_at--570--8611Chr04:26719068..26719092 (25 bp)
TGGTGACCCTGGTACTTGGCGTCGA
LOC_Os04g45530
OsAffx.4098.1.S1_at--1134--9471Chr04:26719095..26719119 (25 bp)
TCTCCTCGCCGACAGAGGTAATGTC
LOC_Os04g45530
OsAffx.4098.1.S1_at--244--7831Chr04:26719111..26719135 (25 bp)
GGTAATGTCCTCATCGGCAATAGCG
LOC_Os04g45530
OsAffx.4098.1.S1_at--925--4051Chr04:26719137..26719161 (25 bp)
CGATGATGATAGTAGCCCCTGTGCT
LOC_Os04g45530
OsAffx.4098.1.S1_at--776--1991Chr04:26719166..26719190 (25 bp)
ACTCCGCCAGATCTAGAGGCACCTG
LOC_Os04g45530
OsAffx.4098.1.S1_at--1097--1271Chr04:26719174..26719198 (25 bp)
AGATCTAGAGGCACCTGGCAACGCC
LOC_Os04g45530
OsAffx.4098.1.S1_at--833--8411Chr04:26719189..26719213 (25 bp)
TGGCAACGCCGGGTAGTCCCTTCGT
LOC_Os04g45530
Target Sequence 
TCTGGACATTGCTCATCACTGCGGCGTTGTCGTCGTTGCCTGACCCCCTCCTTGGTTCTAGCTCAATGGGCGCTGGATTT
GGTGACCCTGGTACTTGGCGTCGACCTCTCCTCGCCGACAGAGGTAATGTCCTCATCGGCAATAGCGACGATGATGATAG
TAGCCCCTGTGCTGCCCACTCCGCCAGATCTAGAGGCACCTGGCAACGCCGGGTAGTCCCTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis