Browse Element(s) Details


OsAffx.4114.1.S1_at

Description tigr:9632.m04585
TID=OsAffx.4114.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4748011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47450OsAffx.26501.1.S1_at11/114+27936978..27938033expressed protein
LOC_Os04g47460OsAffx.4113.1.S1_at11/114+27945284..27946050hypothetical protein
LOC_Os04g47470OsAffx.26502.1.S1_at10/114+27947493..27947976hypothetical protein
LOC_Os04g47480OsAffx.4114.1.S1_at11/114+27951506..27955183hypothetical protein
LOC_Os04g47480OsAffx.24732.1.S1_x_at1/114+27951506..27955183hypothetical protein
LOC_Os04g47490OsAffx.14313.1.S1_at11/114+27958254..27958680hypothetical protein
LOC_Os04g47500OsAffx.9930.1.S1_at6/114+27959638..27960999transposon protein, putative, Pong sub-class
LOC_Os04g47510OsAffx.26503.1.S1_at11/114+27961599..27961955hypothetical protein
LOC_Os04g47520OsAffx.14314.1.S1_x_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.2.S1_s_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.1.A1_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47520Os.27822.2.S1_at11/114+27962133..27966274axi 1, putative, expressed
LOC_Os04g47530OsAffx.4115.1.S1_at11/114+27973372..27976315expressed protein
LOC_Os04g47550Os.24756.1.S1_at11/114+27978515..27981013expressed protein
LOC_Os04g47550Os.24756.2.S1_x_at11/114+27978515..27981013expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4114.1.S1_at--63--171Chr04:27954630..27954654 (25 bp)
ATTTTTCGTCTTGGGTGAACGCTCA
LOC_Os04g47480
OsAffx.4114.1.S1_at--1117--7351Chr04:27954644..27954668 (25 bp)
GTGAACGCTCATAGGAACTTTGTAA
LOC_Os04g47480
OsAffx.4114.1.S1_at--673--5371Chr04:27954750..27954774 (25 bp)
GAAGAATAGGCGCTCCATTGGTTTT
LOC_Os04g47480
OsAffx.4114.1.S1_at--491--4571Chr04:27954759..27954783 (25 bp)
GCGCTCCATTGGTTTTTATTATCTG
LOC_Os04g47480
OsAffx.4114.1.S1_at--997--2131Chr04:27954786..27954810 (25 bp)
ACAGATGGTCTCAAGCTATGGATCA
LOC_Os04g47480
OsAffx.4114.1.S1_at--563--2611Chr04:27954833..27954857 (25 bp)
AACGCCATGAAAGCTCTTGTGTCTA
LOC_Os04g47480
OsAffx.4114.1.S1_at--391--5451Chr04:27954902..27954926 (25 bp)
GAACGAATCCTAGCAATCCGAGAAA
LOC_Os04g47480
OsAffx.4114.1.S1_at--96--9831Chr04:27954990..27955014 (25 bp)
TAAACAAGAAGCTGGCCCTAGTACT
LOC_Os04g47480
OsAffx.4114.1.S1_at--239--4551Chr04:27955004..27955028 (25 bp)
GCCCTAGTACTGAGGCGGCAGAGTT
LOC_Os04g47480
OsAffx.4114.1.S1_at--576--8251Chr04:27955020..27955044 (25 bp)
GGCAGAGTTTGCATCAGCGTCCAAC
LOC_Os04g47480
OsAffx.4114.1.S1_at--951--9931Chr04:27955055..27955079 (25 bp)
TACGAAGCCCATTGTGTTGAAGCAA
LOC_Os04g47480
Target Sequence 
ATTTTTCGTCTTGGGTGAACGCTCATAGGAACTTTGTAAGGGCATTGAATGGATGGCTAGCACTCTGTCTTAACTACGAG
ACTGGGGAGACAACTTATGGGGAACCCCCTTATTCACCTGGAAGAATAGGCGCTCCATTGGTTTTTATTATCTGCAACAG
ATGGTCTCAAGCTATGGATCAGATTTCTGAGAAGGATGTGGTTAACGCCATGAAAGCTCTTGTGTCTAGTGTACAGCACT
TGTGGGAGCAGCAAAATCAAGAAGAGGGTGAAGAACGAATCCTAGCAATCCGAGAAAGGGAAAGATGGATGAAGATGTTG
GAAAAGAAGACGCTAGAGGTTAAAAGGGAAGCTGATGAATTAAACAAGAAGCTGGCCCTAGTACTGAGGCGGCAGAGTTT
GCATCAGCGTCCAACAATGCAAACATACGAAGCCCATTGTGTTGAAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis