Browse Element(s) Details


OsAffx.4133.1.S1_at

Description tigr:9632.m04859
TID=OsAffx.4133.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F1K23.4
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5002011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49960Os.10549.1.S1_at11/114+29583969..29586948glycosyl transferase, group 1 family protein, expressed
LOC_Os04g49970Os.53025.1.S1_at11/114+29590137..29591723U-box domain containing protein, expressed
LOC_Os04g49980Os.6618.1.S1_at11/114+29592878..29593643Late embryogenesis abundant group 1 family protein, expressed
LOC_Os04g49990Os.11431.1.S1_at11/114+29594959..29599053AT hook motif family protein, expressed
LOC_Os04g49990Os.11431.2.S1_at11/114+29594959..29599053AT hook motif family protein, expressed
LOC_Os04g50000NANA4+29599643..29603998retrotransposon protein, putative, unclassified
LOC_Os04g50010NANA4+29604457..29604672hypothetical protein
LOC_Os04g50020OsAffx.4133.1.S1_at11/114+29608778..29609834heavy metal-associated domain containing protein, expressed
LOC_Os04g50030OsAffx.26545.1.S1_s_at11/114+29612152..29613524expressed protein
LOC_Os04g50040NANA4+29630755..29631805hypothetical protein
LOC_Os04g50050OsAffx.23502.2.S1_at5/114+29632775..29635801hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0046916biological_processtransition metal ion homeostasis
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
GO:0046914molecular_functiontransition metal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4133.1.S1_at--379--1271Chr04:29609257..29609281 (25 bp)
AGATCATCACTGTAAGGGTTCCCTT
LOC_Os04g50020
OsAffx.4133.1.S1_at--349--2891Chr04:29609270..29609294 (25 bp)
AAGGGTTCCCTTGCATTGCGCAGAG
LOC_Os04g50020
OsAffx.4133.1.S1_at--236--4131Chr04:29609288..29609312 (25 bp)
CGCAGAGTGCGCAGCCAGGGTCAAA
LOC_Os04g50020
OsAffx.4133.1.S1_at--607--10731Chr04:29609323..29609452 (25 bp)
TTGAGCACAAAAGCATTTACGCGGC
LOC_Os04g50020
OsAffx.4133.1.S1_at--1152--10311Chr04:29609443..29609467 (25 bp)
TTTACGCGGCTAAGATTGACCTTGG
LOC_Os04g50020
OsAffx.4133.1.S1_at--514--291Chr04:29609530..29609554 (25 bp)
ATAGAACGCGCAAGTACGGCTTCAT
LOC_Os04g50020
OsAffx.4133.1.S1_at--438--2771Chr04:29609673..29609697 (25 bp)
AAGGAGGTCGTTGCTCCCTACTTCA
LOC_Os04g50020
OsAffx.4133.1.S1_at--90--2171Chr04:29609732..29609756 (25 bp)
ACACCCTGAACTCCATGGATTCAAG
LOC_Os04g50020
OsAffx.4133.1.S1_at--389--2931Chr04:29609754..29609778 (25 bp)
AAGGACACGGTTTTCTTGCATTGCT
LOC_Os04g50020
OsAffx.4133.1.S1_at--5--10731Chr04:29609769..29609793 (25 bp)
TTGCATTGCTCACACTCTAATCAGT
LOC_Os04g50020
OsAffx.4133.1.S1_at--183--3311Chr04:29609779..29609803 (25 bp)
CACACTCTAATCAGTTCCTCAGTAA
LOC_Os04g50020
Target Sequence 
AGATCATCACTGTAAGGGTTCCCTTGCATTGCGCAGAGTGCGCAGCCAGGGTCAAAGAGGTTCTACTTGAGCACAAAAGC
ATTTACGCGGCTAAGATTGACCTTGGGAAGAACTTGTGTGTCGTCGAGGGGGTGATTGAGGAGAAGAAACTCTTTGAATA
CATCTACCATAGAACGCGCAAGTACGGCTTCATCGAAAAGGTTGAGAAGAAGGAGATCATTGTGGAAGAGAAGGTTGAGG
TGAAGAAGAAGGAAGCTGAGAAGAAGAAGGAAGGCGAGAAGAAGGAGGAGGTCAAGGTGAAGGAGAAGGTCAAGGAGGTC
GTTGCTCCCTACTTCATCCCCTGCACGCACCCTCACTTCATCGATTACTCACACCCTGAACTCCATGGATTCAAGGACAC
GGTTTTCTTGCATTGCTCACACTCTAATCAGTTCCTCAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis