Browse Element(s) Details


OsAffx.4189.1.S1_at

Description tigr:9632.m05458
TID=OsAffx.4189.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5605011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56010OsAffx.14430.1.S1_s_at11/114+33141552..33141881hypothetical protein
LOC_Os04g56020Os.40855.2.S1_x_at10/114+33145067..33147112hypothetical protein
LOC_Os04g56020Os.40855.4.S1_x_at4/114+33145067..33147112hypothetical protein
LOC_Os04g56020Os.40855.4.S1_at1/114+33145067..33147112hypothetical protein
LOC_Os04g56030Os.55343.1.S1_at11/114+33155284..33156145expressed protein
LOC_Os04g56040OsAffx.26624.1.S1_at11/114+33158271..33159338Glycine rich protein family protein, expressed
LOC_Os04g56050OsAffx.4189.1.S1_at11/114+33159721..33161165hypothetical protein
LOC_Os04g56060OsAffx.26625.1.S1_at9/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56060Os.5753.1.S1_x_at9/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56060Os.5753.1.S1_at7/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56070Os.2223.1.S1_at11/114+33175418..33178905COP9 signalosome complex subunit 5b, putative, expressed
LOC_Os04g56080OsAffx.26627.1.S1_x_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56080OsAffx.26627.1.S1_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4189.1.S1_at--614--1131Chr04:33160222..33160246 (25 bp)
AGTGCGGCCATATGGAGCTCGATGA
LOC_Os04g56050
OsAffx.4189.1.S1_at--516--2771Chr04:33160182..33160206 (25 bp)
AAGACGCAGCCAAGATCTCGGCAGA
LOC_Os04g56050
OsAffx.4189.1.S1_at--89--3431Chr04:33160161..33160185 (25 bp)
CAGAGCTACGATGAGGCGCAGACGC
LOC_Os04g56050
OsAffx.4189.1.S1_at--243--3471Chr04:33160135..33160159 (25 bp)
CAGTGGTGGATTTCCGGCTGCGAAT
LOC_Os04g56050
OsAffx.4189.1.S1_at--893--4791Chr04:33160059..33160083 (25 bp)
GCTCGATCGAACTGTACGGCTCAGA
LOC_Os04g56050
OsAffx.4189.1.S1_at--1024--3431Chr04:33160038..33160062 (25 bp)
CAGATTAATTGATCAGCTGCTCCTC
LOC_Os04g56050
OsAffx.4189.1.S1_at--117--2571Chr04:33159879..33160034 (25 bp)
AACTGTCAGCGGCTGATTCCTTCAG
LOC_Os04g56050
OsAffx.4189.1.S1_at--258--8831Chr04:33159866..33159889 (24 bp)
TGATTCCTTCAGTTGCGGACGTGAT
LOC_Os04g56050
OsAffx.4189.1.S1_at--1045--9131Chr04:33159853..33159877 (25 bp)
TGCGGACGTGATTGCCATGGGTTAT
LOC_Os04g56050
OsAffx.4189.1.S1_at--761--8631Chr04:33159794..33159818 (25 bp)
TGGGACTAGCCTCCTCGGTGAATCA
LOC_Os04g56050
OsAffx.4189.1.S1_at--622--3971Chr04:33159779..33159803 (25 bp)
CGGTGAATCATCTGTTGGCGTGGTC
LOC_Os04g56050
Target Sequence 
AGTGCGGCCATATGGAGCTCGATGAGGCAGGAGAAGGGAGAAGACGCAGCCAAGATCTCGGCAGAGCTACGATGAGGCGC
AGACGCGCAGTGGTGGATTTCCGGCTGCGAATGGGGGTCGCGCGGGGTTCAAAACTCCGAACCCCCATGGGTCTCTACCA
GCCGCTCGATCGAACTGTACGGCTCAGATTAATTGATCAGCTGCTCCTCGCGAACTGTCAGCGGCTGATTCCTTCAGTTG
CGGACGTGATTGCCATGGGTTATTTGGGCTGGGCCGCATGGCACGGCCTCGCCGTTCTGGGACTAGCCTCCTCGGTGAAT
CATCTGTTGGCGTGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis