Browse Element(s) Details


OsAffx.4217.1.S1_at

Description tigr:9632.m05839
TID=OsAffx.4217.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5497011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54930Os.9220.2.S1_x_at11/114+32452852..32459253ABC transporter family protein, expressed
LOC_Os04g54930OsAffx.26608.1.S1_x_at11/114+32452852..32459253ABC transporter family protein, expressed
LOC_Os04g54940Os.17881.1.S1_at10/114+32465478..32468508microtubule-associated EB1 family protein, putative, expressed
LOC_Os04g54950OsAffx.4177.1.S1_at11/114+32468995..32469968hypothetical protein
LOC_Os04g54960OsAffx.14421.1.S1_at10/114+32470977..32473449hypothetical protein
LOC_Os04g54970OsAffx.4217.1.S1_at11/114+32477543..32478846hypothetical protein
LOC_Os04g54980OsAffx.14422.1.S1_at10/114+32479642..32481779hypothetical protein
LOC_Os04g54990OsAffx.26609.1.S1_at11/114+32482457..32483307hypothetical protein
LOC_Os04g55000OsAffx.4178.1.S1_at11/114+32484196..32484834cullin, putative
LOC_Os04g55009NANA4+32488693..32489123NA
LOC_Os04g55020OsAffx.22848.4.S1_at2/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55020OsAffx.22848.3.S1_x_at1/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55020OsAffx.22848.4.S1_x_at1/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4217.1.S1_at--1059--2171Chr04:32478126..32478150 (25 bp)
ACACACGAGCACGAAGGCCCAAGAG
LOC_Os04g54970
OsAffx.4217.1.S1_at--342--5891Chr04:32477956..32477980 (25 bp)
GAGCGATTTGTGTACATTTCTACAG
LOC_Os04g54970
OsAffx.4217.1.S1_at--683--3471Chr04:32477934..32477958 (25 bp)
CAGGTGGATCATCCATGTCGGGCAC
LOC_Os04g54970
OsAffx.4217.1.S1_at--227--7611Chr04:32477909..32477933 (25 bp)
GGGCACATCCACTTTGTTCCTGTTT
LOC_Os04g54970
OsAffx.4217.1.S1_at--1029--8771Chr04:32477889..32477913 (25 bp)
TGTTTCTCCATGTTGTATCTGCACT
LOC_Os04g54970
OsAffx.4217.1.S1_at--510--3851Chr04:32477871..32477895 (25 bp)
CTGCACTTCTTATCACAGCTGTGAA
LOC_Os04g54970
OsAffx.4217.1.S1_at--269--7351Chr04:32477851..32477875 (25 bp)
GTGAAGAATCCCAGCATCCGGAAGA
LOC_Os04g54970
OsAffx.4217.1.S1_at--570--9671Chr04:32477816..32477840 (25 bp)
TCAAGTTGGGCACCGAGTCCGATTA
LOC_Os04g54970
OsAffx.4217.1.S1_at--336--1151Chr04:32477801..32477825 (25 bp)
AGTCCGATTATCTCCATCTGTTCTT
LOC_Os04g54970
OsAffx.4217.1.S1_at--739--9171Chr04:32477756..32477780 (25 bp)
TGCCGCCATTGCATTCACGTATGAT
LOC_Os04g54970
OsAffx.4217.1.S1_at--1017--7531Chr04:32477574..32477598 (25 bp)
GTGGCTGCCACCAGAACATCGACAA
LOC_Os04g54970
Target Sequence 
ACACACGAGCACGAAGGCCCAAGAGCGACGGCACCAACTCCCCCTTGCCCGACGGTGATGACACCCTGGCCGACGACGCC
ATCTCCACCCTGCCCGACACCGAGGCCACAAGCTCCGCACCGGCCACGCCGCAGATTCCAGACAGCAACGCCGCCGCCTC
TACCCTGTTTGAGCGATTTGTGTACATTTCTACAGGTGGATCATCCATGTCGGGCACGGGCACATCCACTTTGTTCCTGT
TTCTCCATGTTGTATCTGCACTTCTTATCACAGCTGTGAAGAATCCCAGCATCCGGAAGAAGGTTGCCGATCAAGTTGGG
CACCGAGTCCGATTATCTCCATCTGTTCTTTCTGTTTTTGTTTTCTCCTCTGCCGCCATTGCATTCACGTATGATGCCAT
TAAGTCCGGCAAGGAGCTCGAAGGTCTTGGTTCTTATCTTCTTAAGATTACCAAGACGGGGAAGTACAGTGGCTGCCACC
AGAACATCGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis