Browse Element(s) Details


OsAffx.4347.1.S1_at

Description tigr:9633.m01368
TID=OsAffx.4347.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1548011/11hypothetical protein
LOC_Os12g086401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15440OsAffx.4346.1.S1_at11/115+8708121..8710221hypothetical protein
LOC_Os05g15440Os.56292.1.S1_x_at1/115+8708121..8710221hypothetical protein
LOC_Os05g15450NANA5+8711324..8712109retrotransposon protein, putative, unclassified
LOC_Os05g15460OsAffx.199.1.S1_at2/115+8713587..8715336retrotransposon protein, putative, unclassified
LOC_Os05g15470NANA5+8718684..8725404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15480OsAffx.4347.1.S1_at11/115+8734339..8735391hypothetical protein
LOC_Os05g15490OsAffx.828.1.S1_x_at1/115+8740964..8741620retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15510Os.49161.1.S1_s_at11/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15510Os.49161.1.S1_at11/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15510Os.6163.1.S1_at9/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15510Os.4986.1.S1_at1/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15520Os.8751.1.S1_at11/115+8757256..8761842DNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4347.1.S1_at--241--6751Chr05:8734658..8734682 (25 bp)
GTTCACCCCAACACTGCGAGAAGTA
LOC_Os05g15480
OsAffx.4347.1.S1_at--383--1911Chr05:8734912..8734934 (23 bp)
ACGGGAACTACAAGCGACACGCGAT
LOC_Os05g15480
OsAffx.4347.1.S1_at--962--1731Chr05:8734949..8734973 (25 bp)
ACGCCTTAATGCAGAATCCGGGTGA
LOC_Os05g15480
OsAffx.4347.1.S1_at--54--8971Chr05:8735025..8735049 (25 bp)
TGAAATCGCCGACGCTTCTGTTATT
LOC_Os05g15480
OsAffx.4347.1.S1_at--1150--92Chr05:8735047..8735071 (25 bp)
ATTCGTGCGTTCAAGTCAGGTGTCC
LOC_Os05g15480
OsAffx.4347.1.S1_at--89--2851Chr05:8735059..8735083 (25 bp)
AAGTCAGGTGTCCAAGATCGCTACA
LOC_Os05g15480
OsAffx.4347.1.S1_at--354--5211Chr05:8735108..8735132 (25 bp)
GAATTACCTTCGCACGCAAGCTGTT
LOC_Os05g15480
OsAffx.4347.1.S1_at--1013--6391Chr05:8735136..8735160 (25 bp)
GATCGTGGATAGATGCGCCCATGCA
LOC_Os05g15480
OsAffx.4347.1.S1_at--134--1311Chr05:8735160..8735184 (25 bp)
AGATGACGCCCTCCGTCAGAAAGAT
LOC_Os05g15480
OsAffx.4347.1.S1_at--155--2631Chr05:8735283..8735307 (25 bp)
AACCGAGGTCCTTGCTACAGATCAA
LOC_Os05g15480
OsAffx.4347.1.S1_at--658--10771Chr05:8735324..8735348 (25 bp)
TTGATGGCTGCATCTTTGTCGGCGA
LOC_Os05g15480
Target Sequence 
GTTCACCCCAACACTGCGAGAAGTACGGGAACTACAAGCGACACGCGATCGAGGACAACCTCCACGCCTTAATGCAGAAT
CCGGGTGAATCTTTGAGGGACTATATTCGGTGTTTTAATGAATGCCAGAATACGATCCCTGAAATCGCCGACGCTTCTGT
TATTCGTGCGTTCAAGTCAGGTGTCCAAGATCGCTACACCACCCAAGAGTTGGCAACAAGGCGAATTACCTTCGCACGCA
AGCTGTTCGAGATCGTGGATAGATGCGCCCATGCAGATGACGCCCTCCGTCAGAAAGATGGGAAAGGAAAAACGGGCGAC
GAGAAGAAAACAACCAACAAGGATACACCAGAGTCTAGCAAGAAAAGGAATAGAAAGAGCGGAAAGTGCAAAGCGGCAAC
CGAGGTCCTTGCTACAGATCAAGCAGAAGATACTTACATTGATGGCTGCATCTTTGTCGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis