Browse Element(s) Details


Os.6163.1.S1_at

Description gb:AK063757.1
DB_XREF= gi:32973775
TID=Os.6163.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6163 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-A08, full insert sequence.
FL= gb:AK063757.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g155109/11Cellulase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15470NANA5+8718684..8725404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15480OsAffx.4347.1.S1_at11/115+8734339..8735391hypothetical protein
LOC_Os05g15490OsAffx.828.1.S1_x_at1/115+8740964..8741620retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15510Os.49161.1.S1_s_at11/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15510Os.49161.1.S1_at11/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15510Os.6163.1.S1_at9/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15510Os.4986.1.S1_at1/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15520Os.8751.1.S1_at11/115+8757256..8761842DNA-binding protein, putative, expressed
LOC_Os05g15530Os.4892.1.S1_at11/115+8764785..8766893aminotransferase, class IV family protein, expressed
LOC_Os05g15540Os.47463.1.S1_x_at3/115+8769524..8774741transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15540Os.14491.2.S1_x_at3/115+8769524..8774741transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15550OsAffx.20673.1.S1_x_at1/115+8777937..8784218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15550OsAffx.13677.1.S1_x_at1/115+8777937..8784218retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6163.1.S1_at--1084--3591NONE
CATTGTTACGAGGTAATCTCGATGT
NONE
Os.6163.1.S1_at--810--6071Chr05:8746259..8746283 (25 bp)
GAGTTTTCAAGTTGAACTGCTGCAT
LOC_Os05g15510
Os.6163.1.S1_at--766--8731Chr05:8746142..8746166 (25 bp)
TGTCATGTTTCACAACATCTCGTAT
LOC_Os05g15510
Os.6163.1.S1_at--658--10331Chr05:8746135..8746159 (25 bp)
TTTCACAACATCTCGTATCATCGTA
LOC_Os05g15510
Os.6163.1.S1_at--116--3271Chr05:8746130..8746154 (25 bp)
CAACATCTCGTATCATCGTATCAGG
LOC_Os05g15510
Os.6163.1.S1_at--676--451Chr05:8746126..8746150 (25 bp)
ATCTCGTATCATCGTATCAGGTGAA
LOC_Os05g15510
Os.6163.1.S1_at--1087--3531Chr05:8746117..8746141 (25 bp)
CATCGTATCAGGTGAAGTTTCTTCT
LOC_Os05g15510
Os.6163.1.S1_at--1028--3271Chr05:8746109..8746133 (25 bp)
CAGGTGAAGTTTCTTCTAAGTGGAA
LOC_Os05g15510
Os.6163.1.S1_at--807--2871Chr05:8746092..8746116 (25 bp)
AAGTGGAAAGCTGTAACATCCTGAA
LOC_Os05g15510
Os.6163.1.S1_at--220--10371Chr05:8746058..8746082 (25 bp)
TTTTCTAATTATGCATTATGCCGAT
LOC_Os05g15510
Os.6163.1.S1_at--21--4952Chr06:10635530..10635616 (24 bp)
GCATTATGCCGATTCTTATGTTTTC
NONE
Target Sequence 
CATTGTTACGAGGTAATCTCGATGTNTGGAGGATGTTGCTTATCTCTCTTANATTTTACTTCTGGTTAAAAATGTNTTGA
AAGGANCCGTATTCATGTTGAGTTTTCAAGTTGAACTGCTGCATGGAAGTTNTCCGTAGTTTTGATGTCGAATGTATGCN
CCNCTTATATTAAATTATGTCATATGAAGTCANAGTTGGAACTTGTAAGCTTGATTTGTCATGTTTCACAACATCTCGTA
TCATCGTATCAGGTGAAGTTTCTTCTAAGTGGAAAGCTGTAACATCCTGAAAATTAACTATTTTCTAATTATGCATTATG
CCGATTCTTATGTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis