Browse Element(s) Details


Os.4892.1.S1_at

Description gb:AK104978.1
DB_XREF= gi:32990187
TID=Os.4892.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4892 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C03, full insert sequence.
FL= gb:AK073635.1 gb:AK104978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1553011/11aminotransferase, class IV family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15490OsAffx.828.1.S1_x_at1/115+8740964..8741620retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15510Os.49161.1.S1_s_at11/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15510Os.49161.1.S1_at11/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15510Os.6163.1.S1_at9/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15510Os.4986.1.S1_at1/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15520Os.8751.1.S1_at11/115+8757256..8761842DNA-binding protein, putative, expressed
LOC_Os05g15530Os.4892.1.S1_at11/115+8764785..8766893aminotransferase, class IV family protein, expressed
LOC_Os05g15540Os.47463.1.S1_x_at3/115+8769524..8774741transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15540Os.14491.2.S1_x_at3/115+8769524..8774741transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15550OsAffx.20673.1.S1_x_at1/115+8777937..8784218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15550OsAffx.13677.1.S1_x_at1/115+8777937..8784218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15560OsAffx.22947.1.S1_x_at6/115+8786328..8790779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15560OsAffx.22947.2.S1_x_at4/115+8786328..8790779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15560Os.45173.1.S1_x_at3/115+8786328..8790779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15560OsAffx.22947.3.S1_x_at3/115+8786328..8790779retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0046654biological_processtetrahydrofolate biosynthesis
GO:0003824molecular_functioncatalytic activity
GO:0008696molecular_function4-amino-4-deoxychorismate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4892.1.S1_at--1034--7271Chr05:8765617..8765641 (25 bp)
GTGCCGGCGTTCGACAGGGTCCTCA
LOC_Os05g15530
Os.4892.1.S1_at--439--6151Chr05:8765489..8765513 (25 bp)
GAGGTGCGCCGAGATGATGTTCGTC
LOC_Os05g15530
Os.4892.1.S1_at--631--4231Chr05:8765452..8765476 (25 bp)
CCGTTGCTGCCCATCGTCGAATGGG
LOC_Os05g15530
Os.4892.1.S1_at--873--3851Chr05:8764974..8764998 (25 bp)
CTGACATGCTTTGCGAAGACATCAA
LOC_Os05g15530
Os.4892.1.S1_at--793--2931Chr05:8764951..8764975 (25 bp)
AAGGCCGGTCTCGACAGAGTACTTG
LOC_Os05g15530
Os.4892.1.S1_at--431--7171Chr05:8764944..8764968 (25 bp)
GTCTCGACAGAGTACTTGTTCCTTA
LOC_Os05g15530
Os.4892.1.S1_at--213--10791Chr05:8764929..8764953 (25 bp)
TTGTTCCTTATGATCAAGCGAGCTA
LOC_Os05g15530
Os.4892.1.S1_at--374--7071Chr05:8764850..8764874 (25 bp)
GTAATACTTCCATTTATGTGAACGA
LOC_Os05g15530
Os.4892.1.S1_at--536--4091Chr05:8764828..8764852 (25 bp)
CGAAATTTTTCCGTATTATGAGTGG
LOC_Os05g15530
Os.4892.1.S1_at--651--10431Chr05:8764813..8764837 (25 bp)
TTATGAGTGGAGGATCCGTCACATT
LOC_Os05g15530
Os.4892.1.S1_at--19--8031Chr05:8764805..8764829 (25 bp)
GGAGGATCCGTCACATTGACAGAAT
LOC_Os05g15530
Target Sequence 
GTGCCGGCGTTCGACAGGGTCCTCAGCGGGTGCACGGCGAGGCGGCTGCTCGCGCTGGCGCCCAGGCTGGTGGACGCCGG
CGTGCTCAGGAGCGTCGGCGCGGCGAGGATCTCCGCCGCCGACGCGAGGAGGTGCGCCGAGATGATGTTCGTCGGCAGCG
GCCTCCCGTTGCTGCCCATCGTCGAATGGGACGGCCAGCCGGTTGGCGATGGTCAAGTGGGGAAAATTGCCCTTGCCCTA
TNCTGACATGCTTTGCGAAGACATCAAGGCCGGTCTCGACAGAGTACTTGTTCCTTATGATCAAGCGAGCTAGACGACGA
CTCATANAGCTTTGGAAGATCAACTTTGTATAATAATAATAATAATGTAATACTTCCATTTATGTGAACGAAATTTTTCC
GTATTATGAGTGGAGGATCCGTCACATTGACAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis