Browse Element(s) Details


Os.49161.1.S1_s_at

Description gb:AK064349.1
DB_XREF= gi:32974367
TID=Os.49161.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49161 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-A03, full insert sequence.
FL= gb:AK064349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1551011/11Cellulase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15470NANA5+8718684..8725404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15480OsAffx.4347.1.S1_at11/115+8734339..8735391hypothetical protein
LOC_Os05g15490OsAffx.828.1.S1_x_at1/115+8740964..8741620retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15510Os.49161.1.S1_s_at11/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15510Os.49161.1.S1_at11/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15510Os.6163.1.S1_at9/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15510Os.4986.1.S1_at1/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15520Os.8751.1.S1_at11/115+8757256..8761842DNA-binding protein, putative, expressed
LOC_Os05g15530Os.4892.1.S1_at11/115+8764785..8766893aminotransferase, class IV family protein, expressed
LOC_Os05g15540Os.47463.1.S1_x_at3/115+8769524..8774741transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15540Os.14491.2.S1_x_at3/115+8769524..8774741transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15550OsAffx.20673.1.S1_x_at1/115+8777937..8784218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15550OsAffx.13677.1.S1_x_at1/115+8777937..8784218retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49161.1.S1_s_at--126--6071Chr05:8749578..8749602 (25 bp)
GAGTTTCTTCAATTTGCCAACGGCT
LOC_Os05g15510
Os.49161.1.S1_s_at--527--4251Chr05:8749549..8749573 (25 bp)
CCGTGCCGTCATCGATGTGCACTAC
LOC_Os05g15510
Os.49161.1.S1_s_at--1037--2171Chr05:8749523..8749547 (25 bp)
ACACGGTGTTCAATGACCTGTTCAA
LOC_Os05g15510
Os.49161.1.S1_s_at--654--8911Chr05:8749510..8749534 (25 bp)
TGACCTGTTCAATAACCTGACTGTG
LOC_Os05g15510
Os.49161.1.S1_s_at--124--9811Chr05:8749498..8749522 (25 bp)
TAACCTGACTGTGCAGCAGAACATT
LOC_Os05g15510
Os.49161.1.S1_s_at--353--4751Chr05:8749240..8749264 (25 bp)
GCTGAGTGGAGAGTACCCAATGCAA
LOC_Os05g15510
Os.49161.1.S1_s_at--836--831Chr05:8749180..8749204 (25 bp)
ATGGATGTTTATGGGCAGGCCACCT
LOC_Os05g15510
Os.49161.1.S1_s_at--884--4991Chr05:8749166..8749190 (25 bp)
GCAGGCCACCTTTGGATGGTCCTAT
LOC_Os05g15510
Os.49161.1.S1_s_at--473--7791Chr05:8749149..8749173 (25 bp)
GGTCCTATTGGACTCTCAAGAATGT
LOC_Os05g15510
Os.49161.1.S1_s_at--294--2371Chr05:8749071..8749095 (25 bp)
AAACCTAACAACTGACATGCCTCTA
LOC_Os05g15510
Os.49161.1.S1_s_at--609--591Chr05:8749055..8749079 (25 bp)
ATGCCTCTAGCTGCCATTGTTACGA
LOC_Os05g15510
Target Sequence 
GAGTTTCTTCAATTTGCCAACGGCTTCCCCCGTGCCGTCATCGATGTGCACTACCACACGGTGTTCAATGACCTGTTCAA
TAACCTGACTGTGCAGCAGAACATTGATTTTATCAAATCAAACTTCTCAAGTGAGCTAAAAAATGTCACAACACAAAATG
GCCCTCTCACCTTTGTGGGAGAATGGGTGGCTGAGTGGAGAGTACCCAATGCAACAAAGGAAGAGTACCAGAGATATGCA
AAGGTGCAGATGGATGTTTATGGGCAGGCCACCTTTGGATGGTCCTATTGGACTCTCAAGAATGTTAACAACCACTGGAA
TCTAGAGTGGATGATCAACAATGGCTACATCTCCTTGAAAACCTAACAACTGACATGCCTCTAGCTGCCATTGTTACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49161.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis