Browse Element(s) Details


OsAffx.13677.1.S1_x_at

Description tigr:9632.m00439
TID=OsAffx.13677.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AC131966 Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0528011/11retrotransposon protein, putative, unclassified
LOC_Os04g0531011/11retrotransposon protein, putative, unclassified
LOC_Os05g155501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g05220NANA4+2590970..2593573retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g05230NANA4+2596124..2596942hypothetical protein
LOC_Os04g05240Os.24831.1.S1_x_at11/114+2599014..2601731retrotransposon protein, putative, unclassified
LOC_Os04g05240Os.24831.3.S1_x_at9/114+2599014..2601731retrotransposon protein, putative, unclassified
LOC_Os04g05240Os.24831.3.S1_s_at4/114+2599014..2601731retrotransposon protein, putative, unclassified
LOC_Os04g05240Os.24831.4.S1_x_at3/114+2599014..2601731retrotransposon protein, putative, unclassified
LOC_Os04g05250NANA4+2603425..2604110hypothetical protein
LOC_Os04g05260OsAffx.1412.2.S1_at1/114+2605514..2607080retrotransposon protein, putative, unclassified
LOC_Os04g05260OsAffx.1412.1.S1_at1/114+2605514..2607080retrotransposon protein, putative, unclassified
LOC_Os04g05270Os.45977.1.S1_at1/114+2609313..2612415retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g05280OsAffx.13677.1.S1_x_at11/114+2617018..2617458retrotransposon protein, putative, unclassified
LOC_Os04g05280OsAffx.20695.1.S1_x_at1/114+2617018..2617458retrotransposon protein, putative, unclassified
LOC_Os04g05290NANA4+2619273..2623240retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g05300OsAffx.22896.1.S1_x_at1/114+2625269..2628451retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g05310OsAffx.13677.1.S1_x_at11/114+2629119..2633446retrotransposon protein, putative, unclassified
LOC_Os04g05310OsAffx.20695.1.S1_x_at1/114+2629119..2633446retrotransposon protein, putative, unclassified
LOC_Os04g05310OsAffx.28492.1.S1_at1/114+2629119..2633446retrotransposon protein, putative, unclassified
LOC_Os04g05330Os.38764.1.S1_x_at8/114+2636256..2641781Protein kinase domain containing protein
LOC_Os04g05330Os.10731.1.A1_a_at8/114+2636256..2641781Protein kinase domain containing protein
LOC_Os04g05330Os.46610.1.S1_x_at5/114+2636256..2641781Protein kinase domain containing protein
LOC_Os04g05330OsAffx.8469.1.A1_x_at3/114+2636256..2641781Protein kinase domain containing protein
LOC_Os04g05330Os.45173.1.S1_x_at2/114+2636256..2641781Protein kinase domain containing protein
LOC_Os04g05330Os.48015.1.A1_x_at2/114+2636256..2641781Protein kinase domain containing protein
LOC_Os04g05330Os.47999.2.A1_x_at1/114+2636256..2641781Protein kinase domain containing protein
LOC_Os04g05330Os.53292.1.S1_x_at1/114+2636256..2641781Protein kinase domain containing protein
LOC_Os04g05330Os.53292.1.S1_at1/114+2636256..2641781Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13677.1.S1_x_at--29--5912Chr04:2629502..2629526 (25 bp)
GAGCTCGCCGGCGTTAGGGAGGTTG
LOC_Os04g05310
OsAffx.13677.1.S1_x_at--1059--3792Chr04:2629499..2629523 (25 bp)
CTCGCCGGCGTTAGGGAGGTTGGCG
LOC_Os04g05310
OsAffx.13677.1.S1_x_at--170--4692Chr04:2629477..2629501 (25 bp)
GCGGCGGAAACGGAGACCATCTACA
LOC_Os04g05310
OsAffx.13677.1.S1_x_at--321--9912Chr04:2629423..2629447 (25 bp)
TACTCACCACGACGAGAAACGATGC
LOC_Os04g05310
OsAffx.13677.1.S1_x_at--312--2012Chr04:2629422..2629446 (25 bp)
ACTCACCACGACGAGAAACGATGCA
LOC_Os04g05310
OsAffx.13677.1.S1_x_at--920--9652Chr04:2629420..2629444 (25 bp)
TCACCACGACGAGAAACGATGCACG
LOC_Os04g05310
OsAffx.13677.1.S1_x_at--467--3372Chr04:2629419..2629443 (25 bp)
CACCACGACGAGAAACGATGCACGA
LOC_Os04g05310
OsAffx.13677.1.S1_x_at--373--1712Chr04:2629418..2629442 (25 bp)
ACCACGACGAGAAACGATGCACGAC
LOC_Os04g05310
OsAffx.13677.1.S1_x_at--516--4094Chr03:13347654..13347790 (25 bp)
CGACGAGAAACGATGCACGACGGCG
NONE
OsAffx.13677.1.S1_x_at--507--1719Chr07:9846050..9846074 (25 bp)
ACCACGGCGCACCTCTTGGCGATGA
NONE
OsAffx.13677.1.S1_x_at--449--1754Chr07:9846060..9846084 (25 bp)
ACCTCTTGGCGATGACGGCAAGCGA
NONE
Target Sequence 
GAGCTCGCCGGCGTTAGGGAGGTTGGCGGCGGAAACGGAGACCATCTACACGTAGAGGACAACGAGACGAACCCGTTGGT
ACTCACCACGACGAGAAACGATGCACGACGGCGGCCGGCGACGAGAAGGAAGACGGCGGCGGCTCGGGTCGACGGCGACG
AGCGAGCTCCGGTGGTCGGCGGCGGGAAAGAAGGGGCGGCCGAGCTTCCTTGCACCACGGCGCACCTCTTGGCGATGACG
GCAAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13677.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis