Browse Element(s) Details


OsAffx.4379.1.S1_at

Description tigr:9633.m01752
TID=OsAffx.4379.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1936011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19310Os.27691.1.S1_x_at6/115+11201165..11204748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19310Os.27691.2.S1_x_at2/115+11201165..11204748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19320NANA5+11205052..11205642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330OsAffx.447.1.S1_at5/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330OsAffx.22947.2.S1_x_at1/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330Os.52609.1.S1_at1/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330OsAffx.22947.1.S1_x_at1/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19340NANA5+11213314..11214063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19350NANA5+11216239..11218409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19360OsAffx.4379.1.S1_at11/115+11225223..11226126hypothetical protein
LOC_Os05g19370Os.11582.1.S1_s_at11/115+11227443..1122949460S ribosomal protein L15, putative, expressed
LOC_Os05g19380Os.49087.1.A1_at11/115+11232855..11235829pentatricopeptide, putative, expressed
LOC_Os05g19390OsAffx.14760.1.S1_at11/115+11241112..11243931pentatricopeptide, putative, expressed
LOC_Os05g19400NANA5+11249699..11250850hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4379.1.S1_at--574--6631Chr05:11225315..11225339 (25 bp)
GTTGTCCACGGCATGTGATCGTGGC
LOC_Os05g19360
OsAffx.4379.1.S1_at--1088--7991Chr05:11225375..11225399 (25 bp)
GGAGGCAACCAGGTCGTCGTTGTCC
LOC_Os05g19360
OsAffx.4379.1.S1_at--115--3471Chr05:11225384..11225408 (25 bp)
CAGGTCGTCGTTGTCCGCGGCATGT
LOC_Os05g19360
OsAffx.4379.1.S1_at--575--6631Chr05:11225393..11225417 (25 bp)
GTTGTCCGCGGCATGTGATCGTGGC
LOC_Os05g19360
OsAffx.4379.1.S1_at--880--4011Chr05:11225470..11225494 (25 bp)
CGTCGTCTGTGACATGTGCTCATGG
LOC_Os05g19360
OsAffx.4379.1.S1_at--226--9471Chr05:11225475..11225499 (25 bp)
TCTGTGACATGTGCTCATGGCGCGG
LOC_Os05g19360
OsAffx.4379.1.S1_at--471--4831Chr05:11225487..11225511 (25 bp)
GCTCATGGCGCGGTTGAAGCTAAGC
LOC_Os05g19360
OsAffx.4379.1.S1_at--1049--8391Chr05:11225493..11225517 (25 bp)
GGCGCGGTTGAAGCTAAGCCGCATT
LOC_Os05g19360
OsAffx.4379.1.S1_at--614--5391Chr05:11225502..11225526 (25 bp)
GAAGCTAAGCCGCATTTCCCGCGTG
LOC_Os05g19360
OsAffx.4379.1.S1_at--616--9791Chr05:11225507..11225531 (25 bp)
TAAGCCGCATTTCCCGCGTGGCAAG
LOC_Os05g19360
OsAffx.4379.1.S1_at--882--4931Chr05:11225513..11225537 (25 bp)
GCATTTCCCGCGTGGCAAGGATGGA
LOC_Os05g19360
Target Sequence 
GTTGTCCACGGCATGTGATCGTGGCGCGGTGGAGGAGGAGGAGGGAAGCGGGGTGAGAGGGGAGGCAACCAGGTCGTCGT
TGTCCGCGGCATGTGATCGTGGCGTGGTGGAAGAGGAGGAGGGGAGCGGGGTGAGAGGGGAGGCAACTGGATCGTCGTCG
TCTGTGACATGTGCTCATGGCGCGGTTGAAGCTAAGCCGCATTTCCCGCGTGGCAAGGATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis