Browse Element(s) Details


OsAffx.4416.1.S1_at

Description tigr:9630.m05078
TID=OsAffx.4416.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g516508/11hypothetical protein
LOC_Os07g319102/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g060192/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g433302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g060282/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g314401/11hypothetical protein
LOC_Os12g068601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51610Os.6076.1.S1_at11/112+31598643..31602284CRAL/TRIO, N-terminus family protein, expressed
LOC_Os02g51620Os.38849.1.S1_at11/112+31603932..31608300Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os02g51640Os.53423.1.S1_at10/112+31616907..31621702expressed protein
LOC_Os02g51650OsAffx.4416.1.S1_at8/112+31627084..31629073hypothetical protein
LOC_Os02g51650OsAffx.30340.1.S1_x_at1/112+31627084..31629073hypothetical protein
LOC_Os02g51660OsAffx.12597.1.S1_at11/112+31630623..31632389PHP domain C-terminal region family protein, expressed
LOC_Os02g51670Os.28117.1.S1_at11/112+31642600..31644576AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4416.1.S1_at--433--8359Chr12:3334384..3334408 (25 bp)
GGCGGCACAAGTCGGCGTCGACCGG
LOC_Os12g06860
OsAffx.4416.1.S1_at--1079--7979Chr11:25642452..25642476 (25 bp)
GGATGTGGTGTTTCGGCGGAGTTTT
LOC_Os11g43330
OsAffx.4416.1.S1_at--640--1631NONE
AGCGGTGGCCGAGCAATCCAAGAGA
NONE
OsAffx.4416.1.S1_at--305--7551NONE
GTGGCCGAGCAATCCAAGAGATTGA
NONE
OsAffx.4416.1.S1_at--363--2771Chr02:31628657..31628681 (25 bp)
AAGAGATTGAATGTGCTGATGCAGC
LOC_Os02g51650
OsAffx.4416.1.S1_at--213--54Chr09:1923254..1923361 (25 bp)
ATTGAATGTGCTGATGCAGCCTTGA
NONE
OsAffx.4416.1.S1_at--956--3612Chr02:31628743..31628767 (25 bp)
CTTCGCCGGAGATCGGAAAGCGATG
LOC_Os02g51650
OsAffx.4416.1.S1_at--14--2371NONE
AAAGCGATGCAGTGCCGCGTCAGAT
NONE
OsAffx.4416.1.S1_at--423--651Chr02:31628765..31629033 (25 bp)
ATGCAGTGCCGCGTCAGATAACTTA
LOC_Os02g51650
OsAffx.4416.1.S1_at--595--7271Chr02:31628770..31629038 (25 bp)
GTGCCGCGTCAGATAACTTACCATA
LOC_Os02g51650
OsAffx.4416.1.S1_at--1017--4631Chr02:31628775..31629043 (25 bp)
GCGTCAGATAACTTACCATACCGCA
LOC_Os02g51650
Target Sequence 
GGCGGCACAAGTCGGCGTCGACCGGAGAGGCGGCGCGACGCGGCTNGACTCGGCGGTGGCGGCGGAGAGAGATGGTGAAC
GCGGCGGCGGCGTTCCAGGGGCAGGGAGGGGAAACGGAGTAGGGGCCGGGGTGCGGCGAGGAACGGCGATGCCGATGGCG
GTGGTAGCGCAGCGCGGCAGCGACGGGAGCGGTGGTGGCGCGCGACTGGAGNNNANGNNNNNNNNNTGCGGCTCGGGTGC
ACGGTGGATGTGGTGTTTCGGCGGAGTTTTGTGGAAATGGAGCGGTGGCCGAGCAATCCAAGAGATTGAATGTGCTGATG
CAGCCTTGAACGACGCCGACGTAGATGATACAATTGTCCGGGGCGGTGGAACATTGGACTTACCCCTTCGCCGGAGATCG
GAAAGCGATGCAGTGCCGCGTCAGATAACTTACCATACCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis