Browse Element(s) Details


OsAffx.4419.1.S1_at

Description tigr:9633.m02235
TID=OsAffx.4419.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g249309/11pentatricopeptide, putative, expressed
LOC_Os02g271301/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24860NANA5+14324236..14327139retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24870NANA5+14327682..14327951hypothetical protein
LOC_Os05g24880Os.15265.1.A1_at10/115+14329824..14335860oxidoreductase, zinc-binding dehydrogenase family protein, putative, expressed
LOC_Os05g24890OsAffx.26994.1.S1_at3/115+14336324..14338283pentatricopeptide, putative, expressed
LOC_Os05g24900Os.49724.1.A1_at11/115+14339661..14341714expressed protein
LOC_Os05g24910Os.27639.1.S1_x_at3/115+14343843..14348716retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24910Os.53731.1.S1_at1/115+14343843..14348716retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24920OsAffx.8980.1.S1_at1/115+14348794..14349519transposon protein, putative, unclassified
LOC_Os05g24930OsAffx.4419.1.S1_at9/115+14350302..14354320pentatricopeptide, putative, expressed
LOC_Os05g24940OsAffx.14817.1.S1_at9/115+14354509..14355449hypothetical protein
LOC_Os05g24950Os.46995.1.S1_x_at1/115+14358552..14361480retrotransposon protein, putative, unclassified
LOC_Os05g24960NANA5+14362435..14364929retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24970Os.12155.1.S1_at11/115+14371563..14374099Small nuclear ribonucleoprotein Sm D2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4419.1.S1_at--317--8211Chr05:14351875..14351899 (25 bp)
GGAATAACTTCCTCAGATATCCTGA
LOC_Os05g24930
OsAffx.4419.1.S1_at--262--6471Chr05:14351721..14351811 (25 bp)
GATAAAGGCTCTGTAGATTGTTCAT
LOC_Os05g24930
OsAffx.4419.1.S1_at--861--6592Chr05:14351706..14351730 (25 bp)
GATTGTTCATTGCTTCTGTCTACAT
LOC_Os05g24930
OsAffx.4419.1.S1_at--281--8731Chr05:14351690..14351714 (25 bp)
TGTCTACATGTCCTTCTGCTTCGTG
LOC_Os05g24930
OsAffx.4419.1.S1_at--1156--9011Chr05:14351667..14351691 (25 bp)
TGCAACTACTTTCCTGCAGCTTATA
LOC_Os05g24930
OsAffx.4419.1.S1_at--38--331Chr05:14351645..14351669 (25 bp)
ATACTGGTGTCAACTCTGTGGTGCC
LOC_Os05g24930
OsAffx.4419.1.S1_at--1042--7491NONE
GTGGTGCCAGGTAATCTACTACAAA
NONE
OsAffx.4419.1.S1_at--351--10831Chr05:14350808..14350828 (21 bp)
TTGTGATTTCTTACAGGAGCTGTCA
LOC_Os05g24930
OsAffx.4419.1.S1_at--297--2771NONE
AAGACGGCTATTACTAGATGTGGAA
NONE
OsAffx.4419.1.S1_at--150--6271Chr05:14350587..14350734 (25 bp)
GATGTGGAAATGTTTACTCTGCAAA
LOC_Os05g24930
OsAffx.4419.1.S1_at--72--4391Chr05:14350375..14350399 (25 bp)
GCCACAAGGGAATCAAATGCCATTT
LOC_Os05g24930
Target Sequence 
GGAATAACTTCCTCAGATATCCTGAAATTTGTAGATAAAGGCTCTGTAGATTGTTCATTGCTTCTGTCTACATGTCCTTC
TGCTTCGTGCAACTACTTTCCTGCAGCTTATACTGGTGTCAACTCTGTGGTGCCAGGTAATCTACTACAAATACTGGAAG
GGCTTGAGGCAAGAGGAAATTGGAGGTGGGCTTTATCTGTTACTGAGTGGGTATACAAGGAGAACATTTACGAGCATGGA
AAAAGCAGGTATATTTGTGATTTCTTACAGGAGCTGTCAGAGAACGATGAGAAAATCAAGTCCTTAGTCAGCATGGGTTT
TCCAGAAGATGAAGCAAAGACGGCTATTACTAGATGTGGAAATGTTTACTCTGCAAACCTATCTGACTATGAGGATGCAG
AGTTCAGTTCCTTTGGAGGAAGAAAGAATACAAGATTCATGGATGGAAGCAAGAAAAAGAGTGGTATGGAAGTGGGCCAC
AAGGGAATCAAATGCCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis