Browse Element(s) Details


OsAffx.4494.1.S1_at

Description tigr:9633.m02911
TID=OsAffx.4494.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=chloroplast nucleoid DNA binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3183011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31780Os.18281.1.S1_at11/115+18427306..18431560Adaptor complexes medium subunit family protein, expressed
LOC_Os05g31800NANA5+18443340..18444094hypothetical protein
LOC_Os05g31810NANA5+18444499..18444810hypothetical protein
LOC_Os05g31820NANA5+18451071..18451625hypothetical protein
LOC_Os05g31830OsAffx.4494.1.S1_at11/115+18452306..18453831hypothetical protein
LOC_Os05g31840OsAffx.30713.1.S1_x_at11/115+18454676..18455221hypothetical protein
LOC_Os05g31840OsAffx.30713.1.S1_at11/115+18454676..18455221hypothetical protein
LOC_Os05g31850OsAffx.31069.1.S1_x_at2/115+18459146..18462204retrotransposon protein, putative, unclassified
LOC_Os05g31850OsAffx.31069.1.S1_at1/115+18459146..18462204retrotransposon protein, putative, unclassified
LOC_Os05g31860OsAffx.21161.1.S1_at2/115+18463059..18468265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31874OsAffx.27111.1.S1_at11/115+18469227..18474266retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4494.1.S1_at--594--5911Chr05:18452881..18452905 (25 bp)
GAGCTCACCGGCATACGCGTTGGCG
LOC_Os05g31830
OsAffx.4494.1.S1_at--1092--7271Chr05:18452782..18452806 (25 bp)
GTGCCAGTGACTTACCTCGAGAAGA
LOC_Os05g31830
OsAffx.4494.1.S1_at--622--1451Chr05:18452763..18452787 (25 bp)
AGAAGAACGCCTACGGCCTCCTGAA
LOC_Os05g31830
OsAffx.4494.1.S1_at--585--4551Chr05:18452720..18452744 (25 bp)
GCTGGGTTCCAACAACACGGAGGAT
LOC_Os05g31830
OsAffx.4494.1.S1_at--221--10771Chr05:18452679..18452703 (25 bp)
TTGACCTGTGCTACAGAAGCCAGCA
LOC_Os05g31830
OsAffx.4494.1.S1_at--1125--8131Chr05:18452651..18452675 (25 bp)
GGACAGGGCGAAGATCCCCGACATA
LOC_Os05g31830
OsAffx.4494.1.S1_at--366--5411Chr05:18452597..18452621 (25 bp)
GAAGCTGCAGCAGTGGAACTACCTC
LOC_Os05g31830
OsAffx.4494.1.S1_at--583--9511Chr05:18452574..18452598 (25 bp)
TCTACCAGGACGAGGATACCGGGCT
LOC_Os05g31830
OsAffx.4494.1.S1_at--121--5651Chr05:18452518..18452542 (25 bp)
GACAGCGATGGGTTGTCGCTCATCG
LOC_Os05g31830
OsAffx.4494.1.S1_at--806--7591Chr05:18452477..18452501 (25 bp)
GGGCACGTACATGATCTACGACCTC
LOC_Os05g31830
OsAffx.4494.1.S1_at--635--7191Chr05:18452447..18452471 (25 bp)
GTCGAGGCTCGGGTTCCAGACGTCC
LOC_Os05g31830
Target Sequence 
GAGCTCACCGGCATACGCGTTGGCGGCAAGGACCTGCAGCTCGGGGGCGGCGGCGGCGGCTCGGCGGGGGGATCCCTGGA
GGCGGTCCTGAGCACCTCCGTGCCAGTGACTTACCTCGAGAAGAACGCCTACGGCCTCCTGAAGAAGGAGCTGGTGAGCG
CGCTGGGTTCCAACAACACGGAGGATGGCTCCGCGCTTGGGCTTGACCTGTGCTACAGAAGCCAGCACATGGACAGGGCG
AAGATCCCCGACATAGCGTTCGTCTTCGGGGGAAACGCGGTGATGAAGCTGCAGCAGTGGAACTACCTCTACCAGGACGA
GGATACCGGGCTGGAGTGCCTGACGATACCGCCGTCGCCGGACGACAGCGATGGGTTGTCGCTCATCGGCAGCATGATCC
AGACGGGCACGTACATGATCTACGACCTCCACAAGTCGAGGCTCGGGTTCCAGACGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis