Browse Element(s) Details


OsAffx.4525.1.S1_at

Description tigr:9633.m03288
TID=OsAffx.4525.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3535011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35300OsAffx.15227.1.S1_s_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.3.S1_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.2.S1_x_at2/115+20878133..20880098hypothetical protein
LOC_Os05g35310OsAffx.14972.1.S1_at11/115+20883436..20886187hypothetical protein
LOC_Os05g35320OsAffx.30475.5.S1_x_at9/115+20887990..20889686ATP synthase beta chain, putative
LOC_Os05g35320OsAffx.30475.1.S1_s_at2/115+20887990..20889686ATP synthase beta chain, putative
LOC_Os05g35330OsAffx.26050.37.S1_s_at11/115+20890698..20891144Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os05g35340OsAffx.27176.1.S1_s_at11/115+20895356..20896726expressed protein
LOC_Os05g35340Os.7559.1.S1_at11/115+20895356..20896726expressed protein
LOC_Os05g35350OsAffx.4525.1.S1_at11/115+20902626..20903091hypothetical protein
LOC_Os05g35360OsAffx.4526.1.S1_at11/115+20906344..20915118Glycosyl hydrolases family 35 protein, expressed
LOC_Os05g35370OsAffx.14973.1.S1_at10/115+20915376..20918109hypothetical protein
LOC_Os05g35380NANA5+20923504..20926508universal stress protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4525.1.S1_at--637--9271Chr05:20903027..20903051 (25 bp)
TCCGGCGAAGCCGTCTTTTCGTCAT
LOC_Os05g35350
OsAffx.4525.1.S1_at--441--10391Chr05:20903012..20903036 (25 bp)
TTTTCGTCATCTCGTTGAGCGACCA
LOC_Os05g35350
OsAffx.4525.1.S1_at--1019--6611Chr05:20902999..20903023 (25 bp)
GTTGAGCGACCACGCCACGCCTTTG
LOC_Os05g35350
OsAffx.4525.1.S1_at--917--1811Chr05:20902983..20903007 (25 bp)
ACGCCTTTGCCGGTTCCTGGATCGT
LOC_Os05g35350
OsAffx.4525.1.S1_at--908--6691Chr05:20902971..20902995 (25 bp)
GTTCCTGGATCGTGGCTAGGCGCAA
LOC_Os05g35350
OsAffx.4525.1.S1_at--162--7511Chr05:20902937..20902961 (25 bp)
GTGGTACTGGCTGCTCCGCCGTCGA
LOC_Os05g35350
OsAffx.4525.1.S1_at--788--8711Chr05:20902698..20902722 (25 bp)
TGTCGGAAAGCAAGTGGCAGCATCT
LOC_Os05g35350
OsAffx.4525.1.S1_at--413--7531Chr05:20902685..20902709 (25 bp)
GTGGCAGCATCTGATTGCATCGAGT
LOC_Os05g35350
OsAffx.4525.1.S1_at--848--4971Chr05:20902679..20902703 (25 bp)
GCATCTGATTGCATCGAGTGTTCAA
LOC_Os05g35350
OsAffx.4525.1.S1_at--613--4051Chr05:20902665..20902689 (25 bp)
CGAGTGTTCAATACGATTGCTTCGT
LOC_Os05g35350
OsAffx.4525.1.S1_at--605--3071Chr05:20902656..20902680 (25 bp)
AATACGATTGCTTCGTGTATTCCCC
LOC_Os05g35350
Target Sequence 
TCCGGCGAAGCCGTCTTTTCGTCATCTCGTTGAGCGACCACGCCACGCCTTTGCCGGTTCCTGGATCGTGGCTAGGCGCA
ACTGGGGCTCGTGGTACTGGCTGCTCCGCCGTCGACGGCGAGCCTGACAAGATTTTTGTCGGAAAGCAAGTGGCAGCATC
TGATTGCATCGAGTGTTCAATACGATTGCTTCGTGTATTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4525.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis