Browse Element(s) Details


OsAffx.4530.1.S1_x_at

Description tigr:9633.m03311
TID=OsAffx.4530.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3555011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35510OsAffx.27178.1.S1_at11/115+21020180..21023083hypothetical protein
LOC_Os05g35510OsAffx.25135.2.S1_x_at1/115+21020180..21023083hypothetical protein
LOC_Os05g35510OsAffx.8277.2.S1_at1/115+21020180..21023083hypothetical protein
LOC_Os05g35520Os.20865.1.S1_at11/115+21029401..21034212deoxynucleoside kinase family, putative, expressed
LOC_Os05g35530Os.6302.1.S1_x_at10/115+21037631..21043658expressed protein
LOC_Os05g35530Os.6302.2.S1_at8/115+21037631..21043658expressed protein
LOC_Os05g35540Os.10470.1.S1_s_at10/115+21043643..21046459expressed protein
LOC_Os05g35540Os.18211.1.S1_at1/115+21043643..21046459expressed protein
LOC_Os05g35550OsAffx.4530.1.S1_at11/115+21046706..21047002hypothetical protein
LOC_Os05g35550OsAffx.4530.1.S1_x_at11/115+21046706..21047002hypothetical protein
LOC_Os05g35560OsAffx.14977.1.S1_at11/115+21048639..21049271hypothetical protein
LOC_Os05g35570Os.23672.1.S1_at11/115+21052072..21055429Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g35580Os.11493.1.A1_at11/115+21058192..21060267Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os05g35594OsAffx.4531.1.S1_s_at11/115+21061148..21065177POT family protein, expressed
LOC_Os05g35594Os.52604.1.A1_at10/115+21061148..21065177POT family protein, expressed
LOC_Os05g35594OsAffx.22811.1.S1_at3/115+21061148..21065177POT family protein, expressed
LOC_Os05g35594OsAffx.22005.1.S1_x_at1/115+21061148..21065177POT family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4530.1.S1_x_at--399--4071Chr05:21046758..21046782 (25 bp)
CGACGCCGTGCGGTCGTACGTCGTC
LOC_Os05g35550
OsAffx.4530.1.S1_x_at--897--7611Chr05:21046809..21046833 (25 bp)
GGGACATCCAGAAGAAGCCGTGGCT
LOC_Os05g35550
OsAffx.4530.1.S1_x_at--1085--2091Chr05:21046812..21046836 (25 bp)
ACATCCAGAAGAAGCCGTGGCTGCA
LOC_Os05g35550
OsAffx.4530.1.S1_x_at--773--6171Chr05:21046856..21046880 (25 bp)
GAGGAGGACCGCAACGCCGCCATGA
LOC_Os05g35550
OsAffx.4530.1.S1_x_at--387--691Chr05:21046877..21046901 (25 bp)
ATGACCATGAGGCTGACGACGAACA
LOC_Os05g35550
OsAffx.4530.1.S1_x_at--508--911Chr05:21046886..21046910 (25 bp)
AGGCTGACGACGAACAAGGAGATCA
LOC_Os05g35550
OsAffx.4530.1.S1_x_at--1025--971Chr05:21046902..21046926 (25 bp)
AGGAGATCAGCAAGCCACGGCACGC
LOC_Os05g35550
OsAffx.4530.1.S1_x_at--696--1271Chr05:21046905..21046929 (25 bp)
AGATCAGCAAGCCACGGCACGCGGT
LOC_Os05g35550
OsAffx.4530.1.S1_x_at--938--391Chr05:21046907..21046931 (25 bp)
ATCAGCAAGCCACGGCACGCGGTGT
LOC_Os05g35550
OsAffx.4530.1.S1_x_at--181--5171Chr05:21046911..21046935 (25 bp)
GCAAGCCACGGCACGCGGTGTTCGC
LOC_Os05g35550
OsAffx.4530.1.S1_x_at--977--7411Chr05:21046928..21046952 (25 bp)
GTGTTCGCCGGACCGTCCTTCGTCG
LOC_Os05g35550
Target Sequence 
CGACGCCGTGCGGTCGTACGTCGTCGAGCCGCGCGTCCTCCGACGAGCGCTGGGACATCCAGAAGAAGCCGTGGCTGCAG
GCGGACGCGCTCCACGGCGAGGAGGACCGCAACGCCGCCATGACCATGAGGCTGACGACGAACAAGGAGATCAGCAAGCC
ACGGCACGCGGTGTTCGCCGGACCGTCCTTCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4530.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis