Browse Element(s) Details


OsAffx.4542.1.S1_at

Description tigr:9633.m03412
TID=OsAffx.4542.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3701011/11hypothetical protein
LOC_Os04g456202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36990Os.10101.1.S1_at11/115+21527207..21528419uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g37000NANA5+21540718..21542173hypothetical protein
LOC_Os05g37010OsAffx.4542.1.S1_at11/115+21547214..21547694hypothetical protein
LOC_Os05g37020OsAffx.27200.1.S1_at10/115+21551206..21552644hypothetical protein
LOC_Os05g37020OsAffx.15850.1.S1_at1/115+21551206..21552644hypothetical protein
LOC_Os05g37030NANA5+21558049..21558447expressed protein
LOC_Os05g37040OsAffx.14989.1.S1_at11/115+21563735..21564517Myb-like DNA-binding domain containing protein
LOC_Os05g37050OsAffx.14990.1.S1_at11/115+21567068..21567863Myb-like DNA-binding domain containing protein
LOC_Os05g37060Os.54934.1.S1_at11/115+21570998..21572195Myb-like DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4542.1.S1_at--1137--7531Chr05:21547248..21547272 (25 bp)
GTGGCGACGGCCTCAGGGCAGTAGG
LOC_Os05g37010
OsAffx.4542.1.S1_at--330--5791Chr05:21547274..21547298 (25 bp)
GACGACGGGTGGCATGCTGCCGCTG
LOC_Os05g37010
OsAffx.4542.1.S1_at--885--4691Chr05:21547318..21547342 (25 bp)
GCGGCAGATTCCTCTGCGCGTGGCC
LOC_Os05g37010
OsAffx.4542.1.S1_at--1071--4693Chr05:21547479..21547503 (25 bp)
GCTGAGGTGTTCTGGAGTCGACGGC
LOC_Os05g37010
OsAffx.4542.1.S1_at--403--9351Chr05:21547496..21547520 (25 bp)
TCGACGGCGGTGTCCCTTCGGACTG
LOC_Os05g37010
OsAffx.4542.1.S1_at--250--3631Chr05:21547511..21547535 (25 bp)
CTTCGGACTGCGGTGGCCTAAACGT
LOC_Os05g37010
OsAffx.4542.1.S1_at--790--7531Chr05:21547523..21547547 (25 bp)
GTGGCCTAAACGTCGGCAGCGTATC
LOC_Os05g37010
OsAffx.4542.1.S1_at--29--7192Chr05:21547534..21547558 (25 bp)
GTCGGCAGCGTATCCTTGGCAAGGA
LOC_Os05g37010
OsAffx.4542.1.S1_at--862--10693Chr05:21547569..21547593 (25 bp)
TTGGGTGGAGGTGGTATCGTTCGCA
LOC_Os05g37010
OsAffx.4542.1.S1_at--568--511Chr05:21547584..21547608 (25 bp)
ATCGTTCGCAGTGGCGTCTGGCAGA
LOC_Os05g37010
OsAffx.4542.1.S1_at--819--5311Chr05:21547607..21547631 (25 bp)
GAAGTGCTTGGGAGTTCGGGCGGAA
LOC_Os05g37010
Target Sequence 
GTGGCGACGGCCTCAGGGCAGTAGGGGACGACGGGTGGCATGCTGCCGCTGCTAGGCAGTTGGCAGCGCCGCGGCAGATT
CCTCTGCGCGTGGCCTGTCCCCTTCGGCGTGGTGGTGAAGATGGCGACGGAGGATGGAGGGCGGTAGCTGAGGTGTTCTG
GAGTCGACGGCGGTGTCCCTTCGGACTGCGGTGGCCTAAACGTCGGCAGCGTATCCTTGGCAAGGAGACGGCGGGATTGG
GTGGAGGTGGTATCGTTCGCAGTGGCGTCTGGCAGAAGTGCTTGGGAGTTCGGGCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis