Browse Element(s) Details


OsAffx.4557.1.S1_s_at

Description tigr:9633.m03651
TID=OsAffx.4557.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cold regulated protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3925011/11expressed protein
LOC_Os07g487001/11expressed protein
LOC_Os01g208501/11hypothetical protein
LOC_Os09g262501/11hypothetical protein
LOC_Os09g355801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39210Os.56330.1.S1_at11/115+22905044..22908281expressed protein
LOC_Os05g39220Os.52081.1.S1_at10/115+22909339..22911266GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g39220OsAffx.23696.1.S1_x_at1/115+22909339..22911266GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g39230Os.8138.1.S1_at11/115+22913774..22922353expressed protein
LOC_Os05g39240Os.20364.1.S1_at11/115+22926028..22930243Ammonium transporter 2, putative, expressed
LOC_Os05g39240Os.54723.1.S1_at1/115+22926028..22930243Ammonium transporter 2, putative, expressed
LOC_Os05g39250OsAffx.4557.1.S1_s_at11/115+22930379..22931153expressed protein
LOC_Os05g39260OsAffx.27235.1.S1_at11/115+22937448..22938032Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39270Os.46610.1.S1_x_at4/115+22944969..22950990hypothetical protein
LOC_Os05g39270Os.27066.1.A1_x_at1/115+22944969..22950990hypothetical protein
LOC_Os05g39270Os.53292.1.S1_at1/115+22944969..22950990hypothetical protein
LOC_Os05g39270Os.52049.1.S1_at1/115+22944969..22950990hypothetical protein
LOC_Os05g39280NANA5+22951541..22954678retrotransposon protein, putative, unclassified
LOC_Os05g39290NANA5+22954985..22955887hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
GO:0008429molecular_functionphosphatidylethanolamine binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4557.1.S1_s_at--123--1091Chr05:22930726..22930750 (25 bp)
AGGGCGTCAACGACTGGAAGCAGCC
LOC_Os05g39250
OsAffx.4557.1.S1_s_at--668--3251Chr05:22930719..22930743 (25 bp)
CAACGACTGGAAGCAGCCCGGCTGG
LOC_Os05g39250
OsAffx.4557.1.S1_s_at--1008--1855Chr09:20450551..20450575 (25 bp)
ACGACGAGGTGCACCTCGGCAACAA
LOC_Os09g35580
OsAffx.4557.1.S1_s_at--1077--7331Chr05:22930534..22930652 (25 bp)
GTGCACCTCGGCAACAAGGTGACCA
LOC_Os05g39250
OsAffx.4557.1.S1_s_at--724--9411Chr05:22930527..22930645 (25 bp)
TCGGCAACAAGGTGACCAAGGACAA
LOC_Os05g39250
OsAffx.4557.1.S1_s_at--948--871Chr05:22930456..22930480 (25 bp)
ATGGCCGTCTTCTAGGACGCGAGCT
LOC_Os05g39250
OsAffx.4557.1.S1_s_at--657--10571Chr05:22930447..22930471 (25 bp)
TTCTAGGACGCGAGCTCTCTGCATT
LOC_Os05g39250
OsAffx.4557.1.S1_s_at--465--10091Chr05:22930444..22930468 (25 bp)
TAGGACGCGAGCTCTCTGCATTTTG
LOC_Os05g39250
OsAffx.4557.1.S1_s_at--972--151Chr05:22930425..22930449 (25 bp)
ATTTTGACACCCCTGTGAGACTGTT
LOC_Os05g39250
OsAffx.4557.1.S1_s_at--1007--5631Chr05:22930420..22930444 (25 bp)
GACACCCCTGTGAGACTGTTCTTTG
LOC_Os05g39250
OsAffx.4557.1.S1_s_at--1076--1791Chr05:22930417..22930441 (25 bp)
ACCCCTGTGAGACTGTTCTTTGCAG
LOC_Os05g39250
Target Sequence 
AGGGCGTCAACGACTGGAAGCAGCCCGGCTGGCGCGGCCCCATCCCTCCCTCCCGCGGCCACCGCATCCAGTTCAAGCTC
TACGCCCTCGACGACGAGGTGCACCTCGGCAACAAGGTGACCAAGGACAAGCTGATGGACGCCATCGAGGGGCATGTGCT
GGGAGAAGCCGAGCTCATGGCCGTCTTCTAGGACGCGAGCTCTCTGCATTTTGACACCCCTGTGAGACTGTTCTTTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4557.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis