Browse Element(s) Details


OsAffx.4560.1.S1_at

Description tigr:9633.m03669
TID=OsAffx.4560.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g394409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39390Os.4611.1.S1_at10/115+23021011..23026678outer membrane protein, OMP85 family protein, expressed
LOC_Os05g39400OsAffx.15024.1.S1_at11/115+23028111..23029574expressed protein
LOC_Os05g39410Os.17718.1.S1_at11/115+23029707..23033996Leucine Rich Repeat family protein, expressed
LOC_Os05g39420OsAffx.19542.3.S1_x_at7/115+23037438..23041321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39420OsAffx.21754.1.S1_x_at2/115+23037438..23041321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39430NANA5+23046664..23047655retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39440OsAffx.4560.1.S1_at9/115+23048851..23051138hypothetical protein
LOC_Os05g39440OsAffx.12420.1.S1_at1/115+23048851..23051138hypothetical protein
LOC_Os05g39440OsAffx.17718.1.A1_at1/115+23048851..23051138hypothetical protein
LOC_Os05g39450NANA5+23055489..23056577Glutaredoxin family protein, expressed
LOC_Os05g39460Os.47463.1.S1_x_at4/115+23064154..23067854transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g39460Os.14491.2.S1_x_at4/115+23064154..23067854transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g39470Os.27037.1.A1_at1/115+23069436..23072234transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4560.1.S1_at--90--10431Chr05:23051011..23051035 (25 bp)
TTATACTGGTTTGGACCCCTTATCT
LOC_Os05g39440
OsAffx.4560.1.S1_at--848--312Chr11:3238598..3239020 (25 bp)
ATACTGGTTTGGACCCCTTATCTGA
NONE
OsAffx.4560.1.S1_at--300--9931Chr05:23051008..23051032 (25 bp)
TACTGGTTTGGACCCCTTATCTGAC
LOC_Os05g39440
OsAffx.4560.1.S1_at--135--4191NONE
CCCTTATCTGACAGAGGCTGGCGAC
NONE
OsAffx.4560.1.S1_at--424--10431NONE
TTATCTGACAGAGGCTGGCGACGGC
NONE
OsAffx.4560.1.S1_at--704--8291Chr05:23049156..23049180 (25 bp)
GGCTTCTCTCTACGACAACCCGTGG
LOC_Os05g39440
OsAffx.4560.1.S1_at--730--3731Chr05:23049151..23049175 (25 bp)
CTCTCTACGACAACCCGTGGAGCTG
LOC_Os05g39440
OsAffx.4560.1.S1_at--634--831Chr05:23049096..23049120 (25 bp)
ATGGAGATAGCAGCGCCAGAAGGTC
LOC_Os05g39440
OsAffx.4560.1.S1_at--285--4611Chr05:23049029..23049053 (25 bp)
GCGACGCTGATGATGGGAGGGCTGC
LOC_Os05g39440
OsAffx.4560.1.S1_at--30--4711Chr05:23048971..23048995 (25 bp)
GCGGCGGTGCCGGATGCAGCCAGGG
LOC_Os05g39440
OsAffx.4560.1.S1_at--534--3791Chr05:23048918..23048942 (25 bp)
CTCGCCGAGGGAGCCGGATGAGGGA
LOC_Os05g39440
Target Sequence 
TTATACTGGTTTGGACCCCTTATCTGACAGAGGCTGGCGACGGCGGCGGCTTCTCTCTACGACAACCCGTGGAGCTGAGG
CAGAGGGGGCAACACTGGATGGCGGGGATGGAGATAGCAGCGCCAGAAGGTCGGGGGGCGGGGGCAGATGCGGCGGCTTG
GGAAGGGGAGAGGAGCGACGCTGATGATGGGAGGGCTGCGGGTGGCCGCGTCGGATGCGGTCGGGGATGGAGGCGGCGGT
GCCGGATGCAGCCAGGGGCGGAGGCGACGGCGCCGGATGTGGCGGCTCGCCGAGGGAGCCGGATGAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis