Browse Element(s) Details


OsAffx.15024.1.S1_at

Description tigr:9633.m03665
TID=OsAffx.15024.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3940011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39360OsAffx.10756.1.S1_x_at1/115+23004391..23004859transposon protein, putative, unclassified
LOC_Os05g39360OsAffx.8513.1.S1_s_at1/115+23004391..23004859transposon protein, putative, unclassified
LOC_Os05g39370OsAffx.27236.1.S1_at10/115+23006311..23012400hypothetical protein
LOC_Os05g39370OsAffx.28164.2.S1_at1/115+23006311..23012400hypothetical protein
LOC_Os05g39380Os.7336.1.A1_at11/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39380OsAffx.30538.1.S1_x_at1/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39380OsAffx.27068.1.S1_x_at1/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39380OsAffx.27068.1.S1_at1/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39390Os.4611.1.S1_at10/115+23021011..23026678outer membrane protein, OMP85 family protein, expressed
LOC_Os05g39400OsAffx.15024.1.S1_at11/115+23028111..23029574expressed protein
LOC_Os05g39410Os.17718.1.S1_at11/115+23029707..23033996Leucine Rich Repeat family protein, expressed
LOC_Os05g39420OsAffx.19542.3.S1_x_at7/115+23037438..23041321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39420OsAffx.21754.1.S1_x_at2/115+23037438..23041321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39430NANA5+23046664..23047655retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39440OsAffx.4560.1.S1_at9/115+23048851..23051138hypothetical protein
LOC_Os05g39440OsAffx.12420.1.S1_at1/115+23048851..23051138hypothetical protein
LOC_Os05g39440OsAffx.17718.1.A1_at1/115+23048851..23051138hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15024.1.S1_at--530--9211Chr05:23028976..23029000 (25 bp)
TCCAACGCAAGGAGAGTGAGCCGCC
LOC_Os05g39400
OsAffx.15024.1.S1_at--978--4151Chr05:23029006..23029030 (25 bp)
CGCCGCGACAGAGCAGGGACATCGA
LOC_Os05g39400
OsAffx.15024.1.S1_at--839--1371Chr05:23029042..23029066 (25 bp)
AGAGCGACGAGATGTCCCCGAGGTC
LOC_Os05g39400
OsAffx.15024.1.S1_at--824--631Chr05:23029053..23029077 (25 bp)
ATGTCCCCGAGGTCGTGCGGGTTCA
LOC_Os05g39400
OsAffx.15024.1.S1_at--68--9131Chr05:23029078..23029102 (25 bp)
TGCTGTTCCTCCCATGGAGCGTCAA
LOC_Os05g39400
OsAffx.15024.1.S1_at--544--831Chr05:23029091..23029115 (25 bp)
ATGGAGCGTCAAGCCGGTGCTCTGC
LOC_Os05g39400
OsAffx.15024.1.S1_at--1142--9711Chr05:23029099..23029123 (25 bp)
TCAAGCCGGTGCTCTGCGGGTTCGC
LOC_Os05g39400
OsAffx.15024.1.S1_at--386--1871Chr05:23029344..23029368 (25 bp)
ACGAGCAAGCGATACTGCGCCGACG
LOC_Os05g39400
OsAffx.15024.1.S1_at--31--5171Chr05:23029348..23029372 (25 bp)
GCAAGCGATACTGCGCCGACGCGAG
LOC_Os05g39400
OsAffx.15024.1.S1_at--195--2951Chr05:23029374..23029398 (25 bp)
AAGGCTCTGAGCAGGCTGGCTCGTT
LOC_Os05g39400
OsAffx.15024.1.S1_at--613--9291Chr05:23029518..23029542 (25 bp)
TCCGAGTCATGGCTCAGTCACGCGC
LOC_Os05g39400
Target Sequence 
TCCAACGCAAGGAGAGTGAGCCGCCGCCGCCGCCGCGACAGAGCAGGGACATCGACGAGGAGACGCAGAGCGACGAGATG
TCCCCGAGGTCGTGCGGGTTCATGCTGTTCCTCCCATGGAGCGTCAAGCCGGTGCTCTGCGGGTTCGCGCGCAGCCGTAC
GTCGCGCGCCGCCGACGCGTCCACCACCGCGTCCTCCCCACCACGCCGCAGCGTCACGCTAGGCAACGCCCTGGAGAAGG
AGAAGGAGAAGGAGAAGGACAAGAGCAAGCTACGCGGCGGCGGCGGCGACCCGTCGCGCTGGTCCGACGAGAAGAGCGGC
AGCGGCAGGGAGTGGTCGAGCCCAGGATGGGGCACGGCGATCCTCGGCACGAGCAAGCGATACTGCGCCGACGCGAGGAA
GGCTCTGAGCAGGCTGGCTCGTTCGGCGACGGACGGCCGTGGCAGCCCGAGGGTAACAGGGGAGAGGAGGGCCGGCAAGC
CGGCGGCGGCGGCCTCGCCGCGGCGCTCGACGTCCGGCGAGATCCCGCCGTTGTCGCCGCCGTCCGAGTCATGGCTCAGT
CACGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis