Browse Element(s) Details


Os.7336.1.A1_at

Description gb:BM421226
DB_XREF= gi:18388028
DB_XREF=V003A06
CLONE=V003A06
TID=Os.7336.1
CNT=11
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.7336 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3938011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39340Os.56256.1.S1_at11/115+22995478..22997336retrotransposon protein, putative, unclassified, expressed
LOC_Os05g39350Os.23209.1.S1_at11/115+22997685..23000566expressed protein
LOC_Os05g39360OsAffx.10756.1.S1_x_at1/115+23004391..23004859transposon protein, putative, unclassified
LOC_Os05g39360OsAffx.8513.1.S1_s_at1/115+23004391..23004859transposon protein, putative, unclassified
LOC_Os05g39370OsAffx.27236.1.S1_at10/115+23006311..23012400hypothetical protein
LOC_Os05g39370OsAffx.28164.2.S1_at1/115+23006311..23012400hypothetical protein
LOC_Os05g39380Os.7336.1.A1_at11/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39380OsAffx.30538.1.S1_x_at1/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39380OsAffx.27068.1.S1_x_at1/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39380OsAffx.27068.1.S1_at1/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39390Os.4611.1.S1_at10/115+23021011..23026678outer membrane protein, OMP85 family protein, expressed
LOC_Os05g39400OsAffx.15024.1.S1_at11/115+23028111..23029574expressed protein
LOC_Os05g39410Os.17718.1.S1_at11/115+23029707..23033996Leucine Rich Repeat family protein, expressed
LOC_Os05g39420OsAffx.19542.3.S1_x_at7/115+23037438..23041321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39420OsAffx.21754.1.S1_x_at2/115+23037438..23041321retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7336.1.A1_at--735--731Chr05:23020364..23020388 (25 bp)
ATGTTGCCGTTGCACTAGCTGCAGA
LOC_Os05g39380
Os.7336.1.A1_at--895--10671Chr05:23020395..23020419 (25 bp)
TTCCAATTCAAGCACCATGGCTGTA
LOC_Os05g39380
Os.7336.1.A1_at--260--2851Chr05:23020461..23020485 (25 bp)
AAGTAATGCAGGGTCTTCGAGATCC
LOC_Os05g39380
Os.7336.1.A1_at--503--1471Chr05:23020558..23020582 (25 bp)
AGAAGGCGGCTGAACTGAGGCTCTC
LOC_Os05g39380
Os.7336.1.A1_at--498--5131Chr05:23020588..23020612 (25 bp)
GCAACTGCTCGTCTAATTTTCTTGG
LOC_Os05g39380
Os.7336.1.A1_at--667--3611Chr05:23020608..23020632 (25 bp)
CTTGGTTTGCTGTTCTCAGTTAGCC
LOC_Os05g39380
Os.7336.1.A1_at--615--2451Chr05:23020672..23020696 (25 bp)
AAAATTCTCTCTTCTACTTGTTTAT
LOC_Os05g39380
Os.7336.1.A1_at--66--3271Chr05:23020718..23020742 (25 bp)
CAAATGTATTCCTTCGGAGTCCCGA
LOC_Os05g39380
Os.7336.1.A1_at--620--6091Chr05:23020734..23020758 (25 bp)
GAGTCCCGACCTGTTTAATTTATAT
LOC_Os05g39380
Os.7336.1.A1_at--69--4891Chr05:23020759..23020783 (25 bp)
GCTTTTCCACGAGGCATGTATACTA
LOC_Os05g39380
Os.7336.1.A1_at--24--5651Chr05:23020882..23020906 (25 bp)
GACACCTGAATCTCATTTGTTGATA
LOC_Os05g39380
Target Sequence 
ATGTTGCCGTTGCACTAGCTGCAGATCAAGCTTCCAATTCAAGCACCATGGCTGTAATTCAGGAGGATGCTGCTTTTACT
GAAAGCACAGGGGAACCAAGTAATGCAGGGTCTTCGAGATCCCTGAGGAGGAGAGGAAGAAATGATGCCTTAGGTTCTTT
GGATGTGGATGGTGTGGGACTACACCGGAACAAGAGAAGGCGGCTGAACTGAGGCTCTCGGGCTGCAACTGCTCGTCTAA
TTTTCTTGGTTTGCTGTTCTCAGTTAGCCCTTTTCTCTCTTCGGGGACGTATCTTCTGGTTGTGATATAAAATTCTCTCT
TCTACTTGTTTATTAGGTGCTGCTGAGTTCATTGCAAATGTATTCCTTCGGAGTCCCGACCTGTTTAATTTATATGCTTT
TCCACGAGGCATGTATACTAAGGAAAGTGAGGGATTGTCATCAGGTGAATTTACTGGATTGTAAATTGCCTATGCAAATG
TATTAGATGGAAATGATCTTGAGGTCAAATAATACATTGACACCTGAATCTCATTTGTTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7336.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis