Browse Element(s) Details


Os.4611.1.S1_at

Description gb:AK069780.1
DB_XREF= gi:32979804
TID=Os.4611.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4611 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028F19, full insert sequence.
FL= gb:AK069780.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3939010/11outer membrane protein, OMP85 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39340Os.56256.1.S1_at11/115+22995478..22997336retrotransposon protein, putative, unclassified, expressed
LOC_Os05g39350Os.23209.1.S1_at11/115+22997685..23000566expressed protein
LOC_Os05g39360OsAffx.10756.1.S1_x_at1/115+23004391..23004859transposon protein, putative, unclassified
LOC_Os05g39360OsAffx.8513.1.S1_s_at1/115+23004391..23004859transposon protein, putative, unclassified
LOC_Os05g39370OsAffx.27236.1.S1_at10/115+23006311..23012400hypothetical protein
LOC_Os05g39370OsAffx.28164.2.S1_at1/115+23006311..23012400hypothetical protein
LOC_Os05g39380Os.7336.1.A1_at11/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39380OsAffx.30538.1.S1_x_at1/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39380OsAffx.27068.1.S1_x_at1/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39380OsAffx.27068.1.S1_at1/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39390Os.4611.1.S1_at10/115+23021011..23026678outer membrane protein, OMP85 family protein, expressed
LOC_Os05g39400OsAffx.15024.1.S1_at11/115+23028111..23029574expressed protein
LOC_Os05g39410Os.17718.1.S1_at11/115+23029707..23033996Leucine Rich Repeat family protein, expressed
LOC_Os05g39420OsAffx.19542.3.S1_x_at7/115+23037438..23041321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39420OsAffx.21754.1.S1_x_at2/115+23037438..23041321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39430NANA5+23046664..23047655retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39440OsAffx.4560.1.S1_at9/115+23048851..23051138hypothetical protein
LOC_Os05g39440OsAffx.12420.1.S1_at1/115+23048851..23051138hypothetical protein
LOC_Os05g39440OsAffx.17718.1.A1_at1/115+23048851..23051138hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4611.1.S1_at--572--531Chr05:23021570..23021594 (25 bp)
ATCGCGGACGATCTGTCTGGGCAAC
LOC_Os05g39390
Os.4611.1.S1_at--313--1931Chr05:23021538..23021562 (25 bp)
ACGGTTGGTGGCCATTTCATGTCAC
LOC_Os05g39390
Os.4611.1.S1_at--882--1831Chr05:23021515..23021539 (25 bp)
ACGCTTCTCGCGATCATACTATGAT
LOC_Os05g39390
Os.4611.1.S1_at--1061--571Chr05:23021402..23021426 (25 bp)
ATGCGACTCAAACATCATACTCCTG
LOC_Os05g39390
Os.4611.1.S1_at--528--9591Chr05:23021301..23021325 (25 bp)
TCATTGTATGACTTGGACTCACCCA
LOC_Os05g39390
Os.4611.1.S1_at--162--3011Chr05:23021277..23021301 (25 bp)
AATGACAGACATTTTGCTCCCTTTC
LOC_Os05g39390
Os.4611.1.S1_at--291--7851Chr05:23021249..23021273 (25 bp)
GGTACCTCGCCGACTATTTAACAGA
LOC_Os05g39390
Os.4611.1.S1_at--549--2551NONE
AACGTTCAACTTCACCAGGGTATCA
NONE
Os.4611.1.S1_at--1016--7871Chr05:23021158..23021182 (25 bp)
GGTTTTGTCCAGCAGTAGTTTTTCA
LOC_Os05g39390
Os.4611.1.S1_at--375--111Chr05:23021083..23021107 (25 bp)
ATTCTGCAAACGTACCCAATTCTTG
LOC_Os05g39390
Os.4611.1.S1_at--618--6371Chr05:23021036..23021060 (25 bp)
GATCGACCGTGCGTAACCATTTAAG
LOC_Os05g39390
Target Sequence 
ATCGCGGACGATCTGTCTGGGCAACAGGTGGGACGGTTGGTGGCCATTTCATGTCACGCTTCTCGCGATCATACTATGAT
TTCTGCACAGAAATGGACTGAAATAGGAGTTGATACATGTCCCATGACTAGATCACTAGACTTCAGGGGAGAAGAATGAG
GGAGCCGGATGCGACTCAAACATCATACTCCTGATCAGATATACGGAAAGTGAGCACAAGCCACACAGGATCTATCAAAG
TCCCAAAAGACTAACCTTTGAAAGAAGGTTCATTGTATGACTTGGACTCACCCAATGACAGACATTTTGCTCCCTTTCAT
GGGTACCTCGCCGACTATTTAACAGAGCAGAACGTTCAACTTCACCAGGGTATCAGCCTTGAATATTATGTGCCCAAGAA
TAGCAAGTTACTGGTTTTGTCCAGCAGTAGTTTTTCAGTCTCAACTACTTGAAGAAAATGTCAATGACCGATGTTATATC
ATCTGTAATTCTGCAAACGTACCCAATTCTTGCTAATTCAGAGTTGTAAAGACTGATCGACCGTGCGTAACCATTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4611.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis