Browse Element(s) Details


Os.17718.1.S1_at

Description gb:AK067959.1
DB_XREF= gi:32977977
TID=Os.17718.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17718 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124N15, full insert sequence.
FL= gb:AK067959.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3941011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39360OsAffx.10756.1.S1_x_at1/115+23004391..23004859transposon protein, putative, unclassified
LOC_Os05g39360OsAffx.8513.1.S1_s_at1/115+23004391..23004859transposon protein, putative, unclassified
LOC_Os05g39370OsAffx.27236.1.S1_at10/115+23006311..23012400hypothetical protein
LOC_Os05g39370OsAffx.28164.2.S1_at1/115+23006311..23012400hypothetical protein
LOC_Os05g39380Os.7336.1.A1_at11/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39380OsAffx.30538.1.S1_x_at1/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39380OsAffx.27068.1.S1_x_at1/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39380OsAffx.27068.1.S1_at1/115+23018514..23020961Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39390Os.4611.1.S1_at10/115+23021011..23026678outer membrane protein, OMP85 family protein, expressed
LOC_Os05g39400OsAffx.15024.1.S1_at11/115+23028111..23029574expressed protein
LOC_Os05g39410Os.17718.1.S1_at11/115+23029707..23033996Leucine Rich Repeat family protein, expressed
LOC_Os05g39420OsAffx.19542.3.S1_x_at7/115+23037438..23041321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39420OsAffx.21754.1.S1_x_at2/115+23037438..23041321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39430NANA5+23046664..23047655retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39440OsAffx.4560.1.S1_at9/115+23048851..23051138hypothetical protein
LOC_Os05g39440OsAffx.12420.1.S1_at1/115+23048851..23051138hypothetical protein
LOC_Os05g39440OsAffx.17718.1.A1_at1/115+23048851..23051138hypothetical protein
LOC_Os05g39450NANA5+23055489..23056577Glutaredoxin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17718.1.S1_at--188--6551Chr05:23030279..23030303 (25 bp)
GATTATGGCCTCCTTATTCTTTGGG
LOC_Os05g39410
Os.17718.1.S1_at--594--10251Chr05:23030260..23030284 (25 bp)
TTTGGGCACATAGATACCTCATTGG
LOC_Os05g39410
Os.17718.1.S1_at--225--1751Chr05:23030245..23030269 (25 bp)
ACCTCATTGGTGACAAACCCCTGAT
LOC_Os05g39410
Os.17718.1.S1_at--1022--8871Chr05:23030224..23030248 (25 bp)
TGATGGACATGGTTGACCCCACACT
LOC_Os05g39410
Os.17718.1.S1_at--1145--2251Chr05:23030198..23030222 (25 bp)
AAATCAGTCCCTGAGGAGCAAGTCA
LOC_Os05g39410
Os.17718.1.S1_at--460--2391Chr05:23030048..23030072 (25 bp)
AATAGTCCGTTGTGGTGGGCTGAAC
LOC_Os05g39410
Os.17718.1.S1_at--185--2431Chr05:23030004..23030028 (25 bp)
AAAAGCCAGTTCATTGCGCAATATT
LOC_Os05g39410
Os.17718.1.S1_at--668--5191Chr05:23029987..23030011 (25 bp)
GCAATATTATTGCTGCGGCAACGGT
LOC_Os05g39410
Os.17718.1.S1_at--297--7031Chr05:23029933..23029957 (25 bp)
GTACAGTCGTTTAGGACCCATTTTG
LOC_Os05g39410
Os.17718.1.S1_at--53--10411Chr05:23029913..23029937 (25 bp)
TTTTGGGCAGGCAATTCAGTTGTAC
LOC_Os05g39410
Os.17718.1.S1_at--34--10051Chr05:23029774..23029798 (25 bp)
TAGTTTCTACACACAATTCCTGCAC
LOC_Os05g39410
Target Sequence 
GATTATGGCCTCCTTATTCTTTGGGCACATAGATACCTCATTGGTGACAAACCCCTGATGGACATGGTTGACCCCACACT
CAAATCAGTCCCTGAGGAGCAAGTCAGAGAACTCACAAAGCTGGTGAAATTATGCTTAAGTGAAGATCCCATGGAGAGGC
CAACGGTGGCAGAGGTAACCGCATGGATGCAAGAGATCACTGGGATTTCTGAAGAAGAGGCGATTCCAAAAAATAGTCCG
TTGTGGTGGGCTGAACTTGAGATCATCACATCATAAAAAGCCAGTTCATTGCGCAATATTATTGCTGCGGCAACGGTGTC
CATTCNTGCCTAGATCACAGCAAATTGTACAGTCGTTTAGGACCCATTTTGGGCAGGCAATTCAGTTGTACAGATATGCC
TGCACTGNTCACACCCATTCTTTCATTCTTTGGTTCATGAANCACACATAATCTCTGAAGTCCACTAAACAGTTGTGACG
AAAGCGAGGAGTATAAATTTTCTACTAGTTTCTACACACAATTCCTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis